AMCG00009594


Basic Information

Item Value
gene id AMCG00009594
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42385499 ~ 42399331 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009594
GGACGGCCCGGTGGGGGGAGACCAACCATTTTGGGAGTTTGCcagttatgttgttgttgttgctttccGCTGGGAAAGACCGCCGCCTTCTAAAATTAGCCGACCTTTTCCCAGCACTGCCGGCTGCAGCTCCTGCGCTCGTCCGCTAGCTGGGCACGCCGGCTGTGCGGTGCGAGGAGCCGCCGCAGTGAGAGCCCCGCAGTCTGCAGCGACTCTCCATTTGCAATGCGCCGGGAAACACGTCGCGGAACCCGGCGCTCAGTGGCTCCGAGCGGCTCTCCCTGGATCCATGTCGCGCTCAGCGCTGCTCTCTGCTAGCAACTAGGCGCCCGAGCAGCAGCAGAGACGGGGAAGAGGGGGTAATACAGTGCAAGAAGAACAGGTTAAAGGAGGCTGCAAAAGCAGCAGCATGTCCGGCTGGAGTAACTCCTCATTTCTCACGATACCCGGCGAGGCGCACTTGGCTGCGGGGGCCAAGGATGAGAGAGCAGCACAAGGGGATAATAACAGCGCCGGCCTGGAGGACGAGGACGACGAGGAGGCGGCTTCGCACTGGAGTCTCCTGCCCAGGTCCTCGCCGGTGCCCCGCAAGCGCGGGATGTCCATCTACGAGGAGACCGCCGACTACCTGAGGGCGCCGCTGGCCTCCCCGAGCAGACGGGTGTCCTTCGCCGACAGCTCGGGGGAGGACCTGGTGGAGGTGAAGTTGTTCACCAAGTTCGACTCCTTCGAAGACGAGGAGCCGCCGGGAGAGGAGGCGGCCTGCGGCATCGGTCCCCACCTGTGCGTTTACACAGTGCTCCCCGACTTCAGTGTCCCCAGCGCCGCTGCGCTCCTGGAGAACCTGCGCGCCAGCAAGGTGGAGGTGGAGAGCCTGGCCGCGGTGCCGGAGGAGCCGCTGGCCATGCTCGGGCTGGTCCGGGTGCTCAACATCTCCTATCACAAGTCCGTGTACGTGCGCTGCACCATGGACGGGTGGCGGACTTACTTCGACCACCTCGCCGATTACGTGCCGGGCTCCTACGACGGAGAGACCGACCAGTTCTCCTTCAAGCTGGCTTTCGCTCAGCCCTACCTGCACGACGGCGCCCGGGCGGAGTTCGTGGTGCGCTACGAGACGGCCCAGGGCGACTTCTGGGCCAATAACGGGGGGCGTAATTATGCGGCCGTGCTGAAGGTTTCGGTGGTCGACCACTTGGGGCCCGGCCtgggaacagaagaaaaaagacccAAGAGCATTTTGAAGGCGACTGCACAGAGATACAGAACGGAGTACGATGATGAAGCCGCAGGAGGGGAGCTGGAAGGTGGAGAGGGGGGCTTGGGCAGCACCGAGACTGCAAGAGACGTGCTGAAGCCAGTGGCCATTCACCCTGAGATCGAGATCGATATCGAGGTCAACAAGGCTATGCCCAGCCTATCTCCTGAGTTCAATGTAGATCTTCATTCAGCTTTCACAGAGGTTACCCCAACTCACTCTCCTCTGCTGCTAGAGAGCCCAATGTCCTCCTTTGAGGAAAATCAAGGGTTAACAACCAGCCCCTCCAAGCAGCATCCATCCCACACGGACTCTCCCAAGCCCCCACAATCCCCTGTAGAGATGCCCCAGAGACTGGGGGGCAGCCTGAAGCAAGAGAAATTGACACTTAAAGATCTCAATGACAGAATCACCTCCATCTTTGTCAACCCTAGTCTTCATGTCAAGGGCACCCCTATAAAAGGAATGGGGGAAGACAAGAAGTCAGCCACCCTTCTCTCCCAGTCCTACCCTGCCCGGGCCTTTAATCCTGACCCCAAAATGTCGGTCATCAGCACAGTGCCTCTCTACACGGAATCCAACGGGTCACCCCTGCAAACACTTCCAGTCCACCCAGAGAGTACCCCAGGGGATCCTGGGAAGGGTGGTccgaaagaggaggaggaggcaacCATGGAAGGAGAAGCAGGATGGGATGCCCATGCCAGTGCTGAGAAAGATCCTGACAACGCTGGCACCAAGTCCTGGAGGGAAGAGAAGGGCTTCCAAAAAGGTCTTGTACAAGAAGGTTATCAGCATTTCAGTGCTGAGGGTCACTGGATTTCTGCAGACTTGATCAGCTCGGGCCCCCAAGACCAAGCAGTCCTAAAGAAGACCCCCTGCCCCCAGATGGACTCTGGAAGAATTGTTCCCCAAGATGAAAGAACAAAGATGGCTGAGATGAATGAGGAGTCCTGCCAGGCTAGGGGTGAGGAAGTGCCAGAGTTAATGGCCTCTTGCGTGTGGCAACCTCCAGTAAAGGGGTTAGACTCTACGGGAGAACATCAGCCAACCTCAATGCGTGAAGAGCACCTGTTCACCCcagccaccccccacccacaagCCAGAAAGCCAGGATTAGTCTTGGGAGACAAGGAACTCACTACTGTCTTTACAGAAGATGGTGGCAAAAAGATGGCTCATGGGGACTCAACAAAGGTTTGGGAGATGGATTTGGCTAGCGATCCAGTTTACATAGAAAGGGGCCTGCCAGTACAAGCCAAGCCCAGACTGGTCTCTCCAGAAGGGGCCTGTGGGGGGTTTCCGCTGAGCACTGGCACAGAAGACACCGAGAGGGCCCTCGAGGACAGGCCTGGAGAGGACAGGCCCGGAAAGGACCGCACGGAGGAGTTCCGCAGTGACCGCCAGCCCACACTTTTCCATCCCACCGATCTGCCAACACGAGAGACCCTGCAGCCCGAGCACAAGCACCAGTCCGAGTCCTACCACACTGAGCCAGCGCCAGAAACCCAGACCCGGCTGAACCAGGCTCTCACCAGGTCCTTCACCTTCCTGGTGTTCTGCATCTGTATGGCCATGAGCCTGAGTCACCCCGGCATCTTCCTCTTTGTTGGAATGTACCTCCTGTCCCTCTACCTTTGATCCTGGTAGCTGtgcctttctgtttttgtgctctgtctctctcctgtttttttttcagtttagaGTTTCAAGTTGCAAATGGACAAACCTCCGTCTGTCTGTGGTCTGTGTTCTCTTTGACTGAGTGGGACAACCTGCATCTCCTAAATGCATTGTCTTTAGAGTCCAGTCATTTCATTCAACTTTAAGAGTGCTCAAAGACACCTAGGGTAATTAAGCACTGATAGCAGGTTCAAGTGTAcctttacatttacaatgtgCTGTACAAACCCATCCTGTCGCAAAGTGTCATGGATTTACTGGGCTAGGCGGCAACTGTATATGTGGGATGAGTTTGCAGTCCTAGCATAAGGcctatgaaaatgcaaatatttgccTGACACAAACCAAATGCCTCTTTGAACCCTGCATCCATGTGCTCTGCGGAAGGAAGCTGGTGCTATATTTCAGTCACTTCCGTTTGCGCGTAGTGTTTGCACTCTGGGTCATCTTATTAATATGCTAAATACACTGTGATCCCAGAAGTTAGTCTAGGCAGCAAGGAATGTGTGGTGGCTAATTCAAACTCCATATTACCGAAAAATATTTTCCTAAACAATGCTGCTTggagaatttatttttttaagggttctgattgttttttttgtttgtttgtttatttgttttaatgaagtcTAAAACTGGGctgtaaatttgtatttatttgtatgtctaATAGCAGCACAAACCACTTTAAACGTCTGCACTGTGATGATGTGAGAGACTCCACCAAAGAAAGGTTATCCACAGTGCGTCGCGGGCAGCCCGTACCACCGGCTGCAACTTCAAAAGAATCCCCCACAACAAAGTCTGGCATCGCCTCTGAATTTGAATAGCCACCTCAACAAGAGCCCAGATACAAAACAGCGATATACAGAAAACAGCTAGGTGTTATAACAGCAGCTAGTGAAACAAACATCCCCTATACTGTTGCATAGGTAATTCCCACTCAGTAAATGCAACTACAGTACTGCTGCAGATTATGTGTTACTGTATATAGCCATTGTGAAGCATATTCAGCCATAAACCCATCAAGGTAAGATACTGTACACGCTGAGGAAGTCTCCTTCTGACTACTTTCTTTCTGAACCCTGAGCACATCCCTACGTATGATAGGAAAGCAAcagtatgaaaaaaatacatttgcctGATATTGAATTTGGAGAGGAAATGACACAGGGTGAGAAGAACCCAAACTATCATACCACCACTGGTTACAGCTGTGAAGAAGAACATTttgcaagaaaaacatttgtgcGTGAGCTGTTGAACTTCttataacaaaaaaactgcGTTGATACACTTTCACTTCTCATTCATCTCCATCTTGTTTTTGATGCATCGTCACTATTGTTTGCAGGGACAAAATAAGGACAAGACAAAACAACTATTTAAGCCTGAAGATTCAAGAAAGAGGAGACTTATATTACCAAGAGGTAGATCTGGGGTCAActacaattgtgtaatttgaaCTAATCAATTACAGTGCATTTACAGTCTAATTAGGTCACTGTAATGTTGACTTTTTTTACAAATCGATAACCATAAGATCCGTTCTATGTTACTTCATCTTATTGACAACTCCAACATacaatacagttaggtccatacatatttggacgaAGACACAATTGtcatgccaccacaatggatttgaaaggaaacaacaaaatgtccctttaatttgagggtagttacatccaaattgggtgaagggtgtaggaattacacccatttatatatgtgctCCCCCCAATATTAGGGACTCAAAATTATTTGGACAAACATAATC

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009594 True 4730 mRNA 0.51 4 42385499 42399331

Neighbor

gene id symbol gene type direction distance location
AMCG00009591 NA coding upstream 87409 42290154 ~ 42298090 (+)
AMCG00009593 NA coding upstream 105070 42275999 ~ 42280429 (+)
AMCG00009586 NA coding upstream 114302 42266822 ~ 42271197 (+)
AMCG00009587 LOC107712663 coding upstream 160980 42213604 ~ 42224519 (+)
AMCG00009588 NA coding upstream 173951 42193294 ~ 42211548 (+)
AMCG00009600 gpr173,LOC108265110,LOC107549979,LOC105898994,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding downstream 14874 42414205 ~ 42415545 (+)
AMCG00009595 NA coding downstream 47626 42446957 ~ 42463730 (+)
AMCG00009604 NA coding downstream 89106 42488437 ~ 42489969 (+)
AMCG00009606 NA coding downstream 132386 42531717 ~ 42546719 (+)
AMCG00009605 LOC107602861 coding downstream 167289 42566620 ~ 42570939 (+)
G57843 NA non-coding upstream 297354 42085279 ~ 42088145 (+)
G57792 NA non-coding upstream 546033 41839165 ~ 41839466 (+)
G57775 NA non-coding upstream 567704 41815921 ~ 41817795 (+)
G57770 NA non-coding upstream 635355 41749555 ~ 41750144 (+)
G57690 NA non-coding upstream 885281 41499964 ~ 41500218 (+)
G57940 NA non-coding downstream 2904 42402235 ~ 42402452 (+)
G57945 NA non-coding downstream 16259 42415590 ~ 42418109 (+)
G57946 NA non-coding downstream 18810 42418141 ~ 42418505 (+)
G57947 NA non-coding downstream 19259 42418590 ~ 42420823 (+)
G57948 NA non-coding downstream 28511 42427842 ~ 42428048 (+)
G57830 NA other upstream 307258 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 786375 41596229 ~ 41599124 (+)
G57604 NA other upstream 1390840 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2280447 40086474 ~ 40105052 (+)
G57430 NA other upstream 2436299 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 1037659 43436990 ~ 43444420 (+)
G58324 NA other downstream 1533621 43932952 ~ 43935762 (+)
G58522 NA other downstream 1987166 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 2162446 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 2185231 44584562 ~ 44603609 (+)

Expression


Co-expression Network