AMCG00009595


Basic Information

Item Value
gene id AMCG00009595
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42446957 ~ 42463730 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009595
AGTCAAGTGAAGAGCCACCAAAGACTAGGGAAGAGATCCTGCTACATTGTCTGCAGGACCTCAGTGATGATCAGTTTAAGGAATTCCTCTTTATGCTGCACAGTCAGAAAAAGGACATCTCTTGGGAACAGCTGAAGAAGACAGACCGAATGGACATAGTACATCACCTAGAGAAAAGTTTGGGCAATGGAGCCAAAGAGGTGGTTTGTGAGGCCCTGCGCCagtaCCTGTCGgcagcacagaaaaacaaacttaATCACCAACTTGCGTATAAGGAAGCGGTGAAAAGATATTACCAGGAAGTGAAAGACTATGATTTCGGAGAGGTGGCCCTGTGTTCCCGCTACACGCCACTCAGGATCCAGCGGATACAGGAGAAGGTCACTGCGGAAGGCCAGAGGAGGGGGCCTCTTATAAGGCAACAGACAGTGGACAAAGAGTGCAACAACCTGGAGCTTCTCTTGACCTTGGCAAATACTAAAACCCTGGCGCTGCTCGGGCAGGCGGGCATTGGGAAGAGCTACACTGTCAAAAAGATAATGCTGGACTGGGCCACTGAGGGCCTTCTGCACAATTTCGATTACATTTTCCATCTTGATTGCCAGGAGCTCTGTGACACAAAGCACGAAAAGACCCTGGCTATGCTAATCTGTGACAAATACCCTGACTTAAATAATTTTGTGGATGAAATgttCTCTTCATCATGGATGGCTTGGACTTTGTGCAGCTTTCCACAGACCAATATGGACCAATACTCTAAGTACTTGGTGCCCTTGCTTCTACGGGGACTTCTGAAGAGGAAGCTGCTTAGGGATTGTTCATTGATGGTGACCATCCGCCCGGCTTTAGCAGACCAGCTCAAGCAGTGCGCCCAGGTGGACCAGTGGGCCGAAATCCTGGGCTTTTCTGAAGAGAACTTGGACAAATATTTCCACAACTACTTCCCAGACACAGAGTGTGCCTCCGAGGCTTATGAGCAAGTGAAGGCCAACGAGAGCCTCCTGACTTTGTGTCTGGTGCCACTAACGTGCTGGGTGGTTTGCACACTTCTCCTGCAACAGATTAATGAAGAAGGGGAAGGCCACATAGATGCTGCCTCTTGCTCCAGCACCTATGTCTTTGTGAGCTATGTCTATGCCATGCTGATGCACCACCAGACCTCCAGTAAGACCCAGAACCCAGAAATTCTTAGCAGCATCTGCCAGCTGTCTAAGGAAGGCATGGAACAATCAAAGTGGGAATTCCCACATAGGGACATTGTGAATATGTTTGGTAACATCCCCACCAACTTCCTTCAGACAAGGCGCTTCAAACATGGGTTGATGATGGTCAAGGTGCACTCATTCACCCATCGCACTCTTCAGGAAGTGCTGGCAGCTGTCTTCTATGCCACCATGAGCAACAGCAAGCACCTTGAAGAGTTCTTGTCCAAATCACTCCTCCCTGACCAGGTCCACAAGAGTGACTTCATCAAGTATCTCTATGGACTGTGCCACGAAGACTCTTGGGTGATCCTTGAAATGTTCAACTTTCAGCCCTGTGCTGATTTGGACAGCCAGCTGAGAGACTGGATGACAAAGGCTGTGAAGTATTATAACCACAATTCCAGAGACCGCTACTTCCTGCTGAACCTGCTACACTGCCTGTTTGAGTTCCAGCAGGATGAGTTCACCAGGGAGACCTTGGAAGCTCTCCGGGATGTCCATCTGCATTCAATTCTGCTGAAGGGGCATGATTTCATGGTCCTACGCTACTGTCTCCAGCACTGCGACCGCCTGCCTAATCTGGTGCTGAACCACTGCAACCTCAGGAGCAAGGAGGCTGCGAAACTTCTCCCCCTATTGGACAACTGTGAAGGATTCAGTATCCAGATGTCCAAACTCAGCCAGGAGTCTATGAAAGAGCTGAGCAGGAAGATCGGGGAGAAGAACAGGGTGATAAACGTGTGGCTATCATGGGTCGTGTGGTCTGGAAACCCCTCAGTGATGGACAGTGCCTTTTTTTCCAGGGTGAGGATTGAGGCTGTTCCCGAAGCCCACCATTAtctcaaacattttctgaaggAATGTGGCTTCTCCCCCAAAGAACTGTACTTCCATAaccaggaagaggaggatgtgGAGGGGATGTTCGAGGTTCTGAAGGAGACCGACTGCCAGCTGCAGCTTATCAGGTACCATTGCAAGCCCCTTATGATGTCACTCAGGCTCGCCCAATCAGCCAGCTGTGCTGAATGCCCGCAGAGTGTGCGCTCCCTAGTGGCCATGCTGGAGAGCAGACCCCACATCACAGAGCTGGACCTGGAGGGGAGTTACCTGGGGGGGGAGGCACTCACAGAGTTCTGTGAAGGACTAGGAGCCATCAGGGGCAGCGGCCTGCAGTCATTGGGGTTGCTGGATACCAATCTGACAGGTGACAGCATTCCCTTGCTCTGTTTCCTCCTCAAAAACACCTCCATCTCGTCTCTGAGTCTGGGACGCAATCCTCTGGGGGACACGGGGATGAGAATCCTGTGCGAGACTCTCAGAGATCCTTGTTGTGGACTGAAGAACCTCTGTTTGACTGATTGTGGGCTCACAGACACTTCTCTTGCTCACCTCAATTGGGCGCTGGAAGGGAACCGCAAACTGACAAAGCTCAAGTTGATCAGAAACAACCTGTCCAAAAGCTCAGCGGAGGAGCTCAAGAGCCTGTGGGAGAGCAGTCAGAGCCTGGAATACCTCACcttcTACCGCAATCCCGTGGCAAAATGTTTCAATTCATCTAATTTTACGCGGGAGACACTCAAACAAGAATCACTAAATGATCGGCCGGCAATATTGCGTGTTTCCGGCTGGTCTGAAAGACGTGCGACGAGTAACTCTGTAGTTGCCCTGGATGCAGAGCTGATGGACGAGCTTCGACTGAAATTCAACCAGCTGGCAGTGGGGATATCCGAGCAAGTGGATGAGAGTGAATTCAAATTGCTCAAAACGTACTGGTCAGGTTTAGTGCCAAAGCACAGGCTGGAAGCGGCGGCGGACCCTGGCCAGCTGTTGGCGACGCTGCTGGAAACTGACTGCATTTCACTGAGCAACGTGCACCAGCTGATTTCCTGCTTCGAGGAGCTGTCTTTGCCGGGACTATCGCAGCGGTGCTTGCAATACGAGAAAGAGGCCAGAATCGTTTGTAGTGGAACCTCTCTCAGTGACAGCCCCATGCACCTGCCCGGTGTCCGCCCCCCCCCGGCACCTTTCAGCGCGACGGTGCCCGTTCCGGAAACGGGGGGTCCCGGGGGCGCCGCGAGCCTGGGGGCGGCGCGCAGAGGGCCACAGAACGAGCCGCAGGAGAGCGATGAGACGCTGCTCTGTGGCCCCTGGGGGCCACTCGCCAGCACACCCTGCAGAGCGCCGATCGAAAGCGTGAACCGGCCGGAAGAGCTGGACGAGGGGACACTTTTTAACGTCGTCTCGTCGGTTAGCAGTCCTGCGAGGACCAGAGAAGGCATCTGTTTGTGGAATGCACAAGTGCTACAGGAGTTTGACCTTCTGCCATCTTTCACGGCCCAGGAGGCGTGGGCTCTGCACAGGGTCCTGGGGGATACTGTGGCTTTCCCACTGCCAGAGACCAAAGGGGAGCGCGTGAAGGAGGTTTTGTCAGCAGTTAGAGAACGGGCCGTTCTACGTCATCTCTGCGAGGCCATGAAGACCCTGAATCGCCAGGATGTGCTTTCTGCCATGCACGCTCAGAGTAACCTGATGTCCAACCTGGGCAGCGACTGGAGGATCCTTGCCGAGAGACTAGGAATCACAGCCACTTACCGAGAACTCTGGAAACAGAAGTCCAAGAACCCAGCAGAAGACGTACTCAACTCCTGGAAGAATAAAATCAGCGAGGCCACAGTGGGTAATCTGTTTGATCACATGATCTCCATGGGCCGGGAAGACCTGGCCGACATGCTGTGAGCGCCGGGACGCAAGATTTCGGAGGGTCATCTTCCACCCTGGCAGAAGGAATCTGTGTCTCCCGTCTCTCCTCGATAACCTGTGCTCTAGCGGGCAGCAATGGCCCCAGATTGCATTGACCGTGCCAGCGCCTTCAGTTGAAAAAGGAAACAGACTCTTGTTTCTGTACTCAGGGTATTTTTTATAGACCTAATAACTGTTTCTCTTGTTACCAAaagaacaagagaaaaacaGGGGAAGGGGTGGTATTTGGGAAATTGTGAAAAGAAAGTATATGTGTAACTTTCAGTCAGTGGCTCAGGTTTATTgcatacacagctctggaatatTTTGCCACTATTGATCAGATAAGCTCTCTGAAAACACAGAGTCCTGGTGATATGTTGATACGTTCACACCAAGTAACTATGCAAACTAAAATTGGCTttaaaacactatatatatatttatttattgattttgtttgtttttatcaaatatGTAGTTAATTGTCCATACAGCACCTTTTTGGCACCTTTTCTAGAGAATTCAAATTTCATCAATGTTGTGattcattactttaaaaaataaagcattggaTTTATATGgacaatatacagtactgtgcaaacgttttaggcaggtgtgaaaaaatgatgtaaagtaagaatgctttcaaggATCAAGAATCGGCAAGGATCTTCGAGTCGCTGTCTGACAGAAGCACAACCCAGAGCAAACTTCAGAAACATGCGTGCTAGAAAGCTATTAAGCTAGAAAGTCGTCCCCCCCCACACATCATGTGAATGGCCTTGGCTGAAGGAGTCTACTGATTGACATAAGAAGAATTGTAATACCGTCTTCCTTctccaaatatggatttgatgtagatttttcttctgttcactcactttgcatttagttaattgataaatataatctattaacatgtctaattttgaaagcattcgTACTTTACTGAATTTTTTCACagctgcctaaaacttttgcacagtactgtaaagtTTGAATGAATGCAAGTGCTGCTTCCTGAAACTAAACATAAGTCAAAACTGCAGAAGACCTAAAAATCCCAttgtcactttattttattttatttgtaaatacaatatgGTAGCCTACTTTTCTACAAACAAGGTGCTAACATGCTCAGATGCGCACAGACAAGAACATTTGTCTCttgtataatataatagtaGCAATAATTATTAACTATTCACTCTGTGAAGGGTGCTACACTAAATAgaaattgattgattattaaATCTGATTTGGAGCCAGCAAGTGATTGTGAATTCATTTAATCCAAGTGTAAATAAAGAATCggtattacattacaaa

Function

GO: NA

KEGG:

id description
ko04380 Osteoclast differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009595 True 5285 mRNA 0.49 16 42446957 42463730

Neighbor

gene id symbol gene type direction distance location
AMCG00009600 gpr173,LOC108265110,LOC107549979,LOC105898994,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding upstream 31412 42414205 ~ 42415545 (+)
AMCG00009594 NA coding upstream 47626 42385499 ~ 42399331 (+)
AMCG00009591 NA coding upstream 148867 42290154 ~ 42298090 (+)
AMCG00009593 NA coding upstream 166528 42275999 ~ 42280429 (+)
AMCG00009586 NA coding upstream 175760 42266822 ~ 42271197 (+)
AMCG00009604 NA coding downstream 24707 42488437 ~ 42489969 (+)
AMCG00009606 NA coding downstream 67987 42531717 ~ 42546719 (+)
AMCG00009605 LOC107602861 coding downstream 102890 42566620 ~ 42570939 (+)
AMCG00009608 NA coding downstream 132363 42596093 ~ 42599734 (+)
AMCG00009610 NA coding downstream 144767 42608497 ~ 42628717 (+)
G57964 NA non-coding upstream 11805 42432877 ~ 42435152 (+)
G57948 NA non-coding upstream 18909 42427842 ~ 42428048 (+)
G57947 NA non-coding upstream 26134 42418590 ~ 42420823 (+)
G57946 NA non-coding upstream 28452 42418141 ~ 42418505 (+)
G57945 NA non-coding upstream 28848 42415590 ~ 42418109 (+)
G57981 NA non-coding downstream 4578 42468308 ~ 42468602 (+)
G57987 NA non-coding downstream 13985 42477715 ~ 42478112 (+)
G58008 NA non-coding downstream 165809 42629539 ~ 42636453 (+)
G58123 NA non-coding downstream 474277 42938007 ~ 42938874 (+)
G58148 NA non-coding downstream 542871 43006601 ~ 43010050 (+)
G57830 NA other upstream 368716 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 847833 41596229 ~ 41599124 (+)
G57604 NA other upstream 1452298 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2341905 40086474 ~ 40105052 (+)
G57430 NA other upstream 2497757 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 973260 43436990 ~ 43444420 (+)
G58324 NA other downstream 1469222 43932952 ~ 43935762 (+)
G58522 NA other downstream 1922767 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 2098047 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 2120832 44584562 ~ 44603609 (+)

Expression


Co-expression Network