AMCG00009605 (LOC107602861)


Basic Information

Item Value
gene id AMCG00009605
gene name LOC107602861
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42566620 ~ 42570939 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009605
ATGAATTACCTGCGACGCCGACTCTCCGACAGCAACTTCATGTCCAACCTGCCCAACGGGTACATGAGCGACCTGCAGCGGCCCGACCCCCCGCAGCCCAGCCCGGCCGTGTCGCCCGGACCCCCGGAGCGCCGCCAGTCCTCCAGCCAGTCTGCCGGCGCCGGCTTCTTCTCCTCCATCTCCAACGCCGTGAAGCAGACgacggcggcggcggcggcgacCTTCAGCGAGGCGACGGACAGAGCCACCGGCCCGTCCAGAGCCAAGGTCCTGCTGGTCATTGACGACCAGCAAACCGACTGGTATGAGCAACATGTGGACCGGAAGTGCAGCCCTGCATTTCCCTCCGCAGACAGCGCCTCGTCCTCAGGGCTGACAGCTGGCCAATTCCCCTTGTTGACAGCCAGCGTCCCAAACAAGGTCCGAGAGGAGACATGA

Function

NR:

description
PREDICTED: synapsin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009605 True 438 mRNA 0.66 3 42566620 42570939

Neighbor

gene id symbol gene type direction distance location
AMCG00009606 NA coding upstream 19901 42531717 ~ 42546719 (+)
AMCG00009604 NA coding upstream 76651 42488437 ~ 42489969 (+)
AMCG00009595 NA coding upstream 102890 42446957 ~ 42463730 (+)
AMCG00009600 gpr173,LOC108265110,LOC107549979,LOC105898994,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding upstream 151075 42414205 ~ 42415545 (+)
AMCG00009594 NA coding upstream 167289 42385499 ~ 42399331 (+)
AMCG00009608 NA coding downstream 25154 42596093 ~ 42599734 (+)
AMCG00009610 NA coding downstream 37558 42608497 ~ 42628717 (+)
AMCG00009609 NA coding downstream 58482 42629421 ~ 42632114 (+)
AMCG00009611 NA coding downstream 62496 42633435 ~ 42633638 (+)
AMCG00009607 imp4,LOC106580531 coding downstream 71254 42642193 ~ 42649279 (+)
G57987 NA non-coding upstream 88508 42477715 ~ 42478112 (+)
G57981 NA non-coding upstream 98018 42468308 ~ 42468602 (+)
G57964 NA non-coding upstream 131468 42432877 ~ 42435152 (+)
G57948 NA non-coding upstream 138572 42427842 ~ 42428048 (+)
G57947 NA non-coding upstream 145797 42418590 ~ 42420823 (+)
G58008 NA non-coding downstream 58600 42629539 ~ 42636453 (+)
G58123 NA non-coding downstream 367068 42938007 ~ 42938874 (+)
G58148 NA non-coding downstream 435662 43006601 ~ 43010050 (+)
G58178 NA non-coding downstream 641771 43212710 ~ 43213028 (+)
G58195 NA non-coding downstream 678464 43249403 ~ 43249641 (+)
G57830 NA other upstream 488379 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 967496 41596229 ~ 41599124 (+)
G57604 NA other upstream 1571961 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2461568 40086474 ~ 40105052 (+)
G57430 NA other upstream 2617420 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 866051 43436990 ~ 43444420 (+)
G58324 NA other downstream 1362013 43932952 ~ 43935762 (+)
G58522 NA other downstream 1815558 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1990838 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 2013623 44584562 ~ 44603609 (+)

Expression


Co-expression Network