AMCG00009660


Basic Information

Item Value
gene id AMCG00009660
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43897866 ~ 43902765 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009660
CGCGGAACAAGTAGTTTTAATCCGGGTgcaaaactctctctctctacagaaAACAATGGTTGTACTTATATGTATCTGATTGTTAATTtacttcaaaattaaatgagCGAGGAGGGCCTTTCTGCAGTCGACATGGCCGCCAGTGCCGTGTCCTGGTCGGATAAAGCTCTCCGGCTTCTGCGGGGACTGAATAACTTCCACCGGCCCGgctccAGTCAGGCTAAGTGCTGCCCGTTCATGGTGTCGGGGCATCAGGTGGGCTGGGTGCCCCCGCGGGTGGTGACTGAGCTGGGCAGGTTCCCAGAGGTGTTCCAGTTGCAGAGGGGCACTGTGGAGCTCAGCCCCGGCCTCGAATCCTACACGCAGCGCTCTGCCGCAGTGGACACGGTGCTGCACTGCCTGCGGGAGGAGAACACGTTCCGGTGTCTCAGAGGCTGGAGGGACGAGAAATATGAAGTGATGCCCCAGTTCTGTGACCCCCCCATGCTGTGTATGGAGAGATCGGCCACCTGCTTGTTTGGGGTGAAGCGCTATGGAGTTCACATCAACGGCTTCACCCGGCAGCCCGATGGGGGTGTGAGCATGTGGGTGGCGCGCAGGGCCCTCGGCAAGCCAACGTATCCTGGACTGCTGGACAACATGGTGGCGGGGGGGCTGGCTGCTCAGACCAGCATCACCCAGACCCTGGTGAAGGAGTGTGCCGAGGAGGCCTGCATCCCAGAATGCATCGCGAAGTGTGCGCATCCCGTCAGCACTGTCAGCTACACCTACGAGGATGACGAGGGTGTTTTCCCAGAGTGCCAGTTTGTGTTTGACCTGGAGGTGCCACAGGGGTTTACACCCCAGATTGGAGATGGGGAGGTGCTGGAGTTCTACCTCTGGCCAATGGACAAGGTGAAAGAAGCACTGGTCACAGCAGAGTTCAAACCCAACTGCGCTCTGGTCGTGTTGGACTTCTTGATACGACACTCCTACCTGGATCCTGACACTGAGCCACACTACCAGCAGTTTGTGGCTGGACTGCACCGGTCGCTGTAACCCTTACAGAAGCCCCCACTCGGCACGCCTGGCCTCTGCCACCAGCCCCACCTCAGACACGGCTGCTTCTCGGTGCTCCAGGAAAAATGGAGCTTCCACACACCTCCCTTTCAATTCTAAAAGGGACACTCCTGGTGCTCCACACACCTGCGCCCCTGTGCTTCACGGTGTGGGTCTGTGTTTTAGGAAGCGCAGATGAATACTTTCTCCACACTGAGGACAAGGACCGGCTTCTGTACAATGGGTTCTGAACTGCACAACACCCATCTGGGGCTCAGCCTCCTTTGGCCAGACAGTACCAAGAGGATACGATTCCCCTTGCCCCCTCACTGCGATAACGggtacataaaaaaataaaaataaaaagctgtgagATTGTTTATTTGATACTCCAGGCAAATACATTTCCTTACAAATGTTATTAGCCAGGctcacaaaccacacacacagttgGGCACAGTTATTGCGATGCCACCACGTTGTTCCTCGGCACAAAGAGGCCACACTCGTGACTTCAGAGAGGACCCTCCTCCTCGACTTCTGATCAACCACAGAGTTTGTACAACACATGAGCACGGAGAGCGCTGTGCTTGAAGACTGAAGAGCAACCATAGCGGGCGAGATCACAGAGCACTCCAGCACCTTTACTGTGGGTCGTGGGCGGGACCTCATCCTCCACAAAACAGGCCTGACCGGCCCGTGTAGCTCCAGCCCGAGTCGAGCAGCAGGGCAGATTCATCCTCTCCGGAGTGTCAGTGTCCCCGGTGGCACCTTGCACAGGGGTGTCCGTGTGGCCGAGACCACAGGTGCCAAAtgtctgtgtgggggggtggggg

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0043233 organelle lumen cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009660 True 1874 mRNA 0.56 8 43897866 43902765

Neighbor

gene id symbol gene type direction distance location
AMCG00009662 NA coding upstream 7395 43880029 ~ 43890471 (+)
AMCG00009659 uba1 coding upstream 24162 43859081 ~ 43873704 (+)
AMCG00009658 camkvl,LOC101077320,LOC105006803 coding upstream 45337 43834883 ~ 43852529 (+)
AMCG00009655 tbc1d25,LOC104943506 coding upstream 141507 43751483 ~ 43756359 (+)
AMCG00009653 NA coding upstream 149738 43743454 ~ 43748128 (+)
AMCG00009661 NA coding downstream 37528 43940293 ~ 43951629 (+)
AMCG00009670 NA coding downstream 75827 43978592 ~ 43992050 (+)
AMCG00009668 NA coding downstream 104149 44006914 ~ 44013300 (+)
AMCG00009667 NA coding downstream 110961 44013726 ~ 44022254 (+)
AMCG00009669 NA coding downstream 122779 44025544 ~ 44051535 (+)
G58304 NA non-coding upstream 22143 43873781 ~ 43875723 (+)
G58291 NA non-coding upstream 216913 43678351 ~ 43680953 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding upstream 573287 43318916 ~ 43324579 (+)
G58215 NA non-coding upstream 586804 43309860 ~ 43311062 (+)
G58195 NA non-coding upstream 648225 43249403 ~ 43249641 (+)
G58317 NA non-coding downstream 6823 43909588 ~ 43915760 (+)
G58319 NA non-coding downstream 18709 43921474 ~ 43926631 (+)
G58467 NA non-coding downstream 266720 44169485 ~ 44169789 (+)
G58510 NA non-coding downstream 422386 44325151 ~ 44325573 (+)
G58513 NA non-coding downstream 425506 44328271 ~ 44360062 (+)
AMCG00009647 NA other upstream 453446 43436990 ~ 43444420 (+)
G57830 NA other upstream 1819625 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 2298742 41596229 ~ 41599124 (+)
G57604 NA other upstream 2903207 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 3792814 40086474 ~ 40105052 (+)
G58324 NA other downstream 30187 43932952 ~ 43935762 (+)
G58522 NA other downstream 483732 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 659012 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 681797 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 729985 44632750 ~ 44651967 (+)

Expression


Co-expression Network