AMCG00009685


Basic Information

Item Value
gene id AMCG00009685
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44364531 ~ 44372415 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009685
CGACGCAAGATGGCGGACACGGCGGCCCCGCAGCGCAGCAGGATGGTGTTAATGTGCGTTTTATTCGCCCTTCTCGCCGTGGGAATCTGCGACGAGCAGGTGCCCGTGGTCATATGGTCCAGCGAAGGGACACCATTGCAATCCCAGACTCCCCCAGTAGCGGGTCACATCGTTTCCAGCTCCCAGCTCGTCTCCTACCTGCAGTCGGCTCTCGGCACGGGCCCCCACAATGTGCTGCTGTTCCTGCAGGACAAGCTCAGCGTAGATGACTTCACCATGTATGGAGGCGTCTTCGGGAACAAGCAGGACAACGCTTTCACCAACCTGGAGTCTGCGCTGCAGTCGGCCCCCTCCTCCCTGGTGCTGCCCTCTGTGGACTGGCAGGCCTCCAGCGCCGTGCCAGCCCTGCTGCAGGAGAAGCTGGGCATCAGCCCCCTCACCCACCTGATGTCACCGAGGGAAGTTCTTAGCGGCAATGACGAAGTGATCGGTCAGGTGTTGAACATCATGAAGACGCAGGCCGTGCAGTACACTGCCGTCTACACTGCCCTCAGGGCTTCACGGGTGATCCGAGAGGTGTCCCTGGCCGTGGAGTCTCTGGGCCGCTCCCTGCTGCAGGCCGCCCCCAGTCCCCAGGTGACATACCCCCCGGTGATGTACAACACCTCCTCCGGGCCCTGCATCCTCTTCTGGGCCCAGAACATGACCATGAGCCAACTGATTGGCACCAACCAGTGGGTGCGCGTGGACCTCGGACCCATGACCTTCGGCTCCTCTGCCAACGTCACCCTCGCAGACTCCTTCTGCAACCGCACGAACGCCAGGTTAACCCTTAATTATGGAAATATTCAGAGTTACCAGAACTTCAAAGTGATTTTCTCGATGAGCAACAATTTCTACCCGGTGTCGGCTCGGGAGTGGTTCACACTGGACACCATGCAGATCCAGTACAGCGGCAACCAGGTGGCCACCTTCAACGCCAGTGGGAACATCTACGCCCCCCAGAACTACTCCTTCCACTGCCAGTCTGTCACCAGTTTCAGCTACCCGCTGCTGGTGCCCAAGACTGCAAACGACCTTGCCGTCCAGTGGGCCGTGTCCTTCGCCGAGTTCCAGatcCAGGGCTTCAACGTGACGGGGCCCAGCTTCTCCTATGCCAGCGACTGCGCCGGCTTCTTCTCCCCCGGCATCTGGATGGGTCTGGTCACCAGCCTGCTGATGCTCCTAATCCTCACCTACGGCCTCCACATGATCATGCAGCTGAAGACCATGGACCGCTTCGATGACCCCAAGGGCCCCAGTATCTCTGTCCCCCAGAACGAGTaacccctccctccccagctcccctccctccccctccccagtcCTTTTCCTCACGCCTCCAGGCTGCCCTGTCCGTGACGTCTCCCAGTTCCCCTCTCGCCAGGCTTTGAAACAGCCCTCCTTCCCTTCCGGGGAGATCTGAATCTTTTCGTCCAACTGAGCTTCATTTGCTTTTGCCCAGAGGGCGGCGATCCAAGCCGAAGGAGATGTTCTTCTCGTTTCCCCACTAGATTTTCACTTATTCAGTTGGCTTGGGTCCTTTTCCTTGTCTTTTAGACCTCTGCTCAATGGAGATGATTTCCCCGGCAGTTGGGAAGGGAGGGCTTGGAGATGTCAGATACAGGTGGTCCTGCAGCCCAGACGCTGTCTCGCGTGTCACGGCCGTAATAATGGAGGAGTCGCAGCAAGGGGGTTTTGAACTGCGTCAAACAATATCCCTGTATCTTCAACCTGGGGGGTTCCTTTATATGGGAGATTTCATTCCAGGAggagtaacacacacacacacacacacacattatctgCCCCCTCTTGCCGTTGGTGTGGTATTATTTAATGTGATCAATCCTACGTTCTCTCCACCCCCCCTTTATATACACTGGATCCCAGAATGACTTGAAAGACAATACATAAATCTCCCCCTCCTGCACATTTGGCTTAATACGCTGAGCCGTGCGTTCTTGTTCAGGTGATATTGACATCTCGTGCAACATGAATCTGTGCACTAGATGGAGCAGTTTAGGGTTTGCTCTCCTGGGGTGTCATTTCGGTGTGAATCCCTAGGGGGTGCCCAAGACTTTCGGCTGAAATGATCCCCCCTTGCTGTCGCTCACAAATTAATTAGATGATGACTTACTTGCCCTTCTGAAGTCTTTCACGCTTCACGACTACTGAACGCCCATTTTGTGTGTCCCACTGGTACCGAGTCATTCCACGCAATTTGTTGTTCGTTAGATGTATTATGTGACGAAGGCTTCAGAACCATTCCCCTGGCATGTTCACACCATTCCCAGTGAGATCGATCCCCGCTCTTCCCACCTGGCGTAGCGCCTCGTTGGTTGACCGTTGGAGTTGCACTGGCCTCTCTCGGTTGAGTGGCAGTAGCTTGACCGCAGTAGCCAACGTGTCAGTCGAAAAGAAGCAGAACAGaactttttgtttagtttttcttttttgggggggtggttaTTAAAAGATTAGATAAAAGCTGTGccagtgtgtatgtatgtatataaagatatataagAACACAGTGTTGCAAAAACTTGATGTCAGTGTCTGTGCTTTTGAGCAACGCCCTGTGTCGGCCAGTGACTCAATCTGCCGTGTCATGTGAACGCCTTTATGTATTGCATCGGCATGAACTGACAGACCCCCAGTGCAGACCCCCTTAGCAGCCTCAATGTGAAATAAACATCCACTTTCTGTCCCCAGTACACCCAAATACAGTGTCTGGCAAAACCACAAGcctggctctgaaacctggagAGTTCAGCTGTGTGGTGCAGTGAGGAAACATTAaatcacagagaaaaataattattttcatgtttatctCAGTTTCTAGGACTGCTGTGTGTTAAGGTGTTCTACAGGGCAGATGTTTGGGCCGAGAGCCTGGACGCTATCCTAAGtagtggtttaaaaataatcaataactTTATCTGTATATATGAGGAAATGCAAATTTGACGTACAGACGTGTGTGATGTatcttctatttatttgtgAGGTTCCTGTGTCcttgcagaatgttttttttgtgtgttttgtctccAGTGAATTCTCCTGTGAATTGAATTTCCACTTTTGTGTTAGGTTTAAGAAAAGCCTTTCCAGATCTAAAAAGATAAATGAATCCATGCTGCAGTAAATTGCGTATTCCTTCACATTTGACATTCCTCCGCCGTGTCTCGTACTTGTTAACCATGCGAGCCCCTTCTACGTACCTTTTGATTTAATGATATTGTTTGTTTACCCGGTTTCAGAAATTCCACTATTTTCTATAGTGGTTAACACTAATTATACCTGAgaagtaattattatttccccccataGGTCTACTGTAAAGAGATCTTACTTATTTGACTTATTTACCTATCTGACACTAGGATCTTATACAATTAAGGCAAGTGGGTTAATGTTCTTTGCTATTTCACCAGGATCGTTTGATCTGTGAAGGATTAGTTAGTGTTATGTCACTTAGTCATTAGGAACATGCCACCCAGAAAGAgatcaaaaatgtatatgacTCGATGTTTAAGCGCTGACTTTGGGacataaaatgtgtgatttgggTTCATGTTCAGCAGCAACCTAGTGAATGTGTACAATGTAAAATGCAGAAGAACAGACTGCAGTAATGGTCTGGTGTCCCTTTTAAACCGATCATTAGTGTAGTGTCCGTGTGTCTACGGTTAAAACGAGCCGATTCTATGTGGTTAAAccataaattaaatgtgtatgttttatggttaattaatcattattaacAGTCAATGAGAAGCATTTTAATGGCAAATTTGTAGTTCCATGTTTTTCTCTTGTCTGTAGTAAATAAACCTTAATTTGCCAACTGCTTTGCTTTAGATGGTACAGGTCTTCCTTCACGGATAGGATTccatttttcgtttttttttttttttttttaatgccaattCTATACGGAACCGAGTCTGGTTCAGCCGTACGGAGGGACCATTTCTTGAGCTTCCCTAAATTATGCGGTCACCTGCAAATGAGAAGGAAAGGCTATTCAAGCAAAGCATTCATCACATTGTTAGTCTGGTAATGGCTCTGGTTTTAATGGGGCTCCTTGCCACTgaaattgtgtgtttaaaaaaaataaatgtgggggggaaaaaagagattGAATAAAATGTCAACTCAAA

Function

GO: NA

KEGG:

id description
K03662 ATPeVS1, ATP6S1; V-type H+-transporting ATPase S1 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009685 True 4214 mRNA 0.49 10 44364531 44372415

Neighbor

gene id symbol gene type direction distance location
AMCG00009686 taz coding upstream 41734 44314972 ~ 44322797 (+)
AMCG00009687 NA coding upstream 50382 44303226 ~ 44314149 (+)
AMCG00009680 NA coding upstream 83344 44265059 ~ 44281187 (+)
AMCG00009682 si:dkey-96f10.1,LOC106609077,LOC108427753,LOC105900165,LOC108276060,LOC107704228 coding upstream 110484 44235551 ~ 44254047 (+)
AMCG00009684 NA coding upstream 142318 44221359 ~ 44222213 (+)
AMCG00009688 NA coding downstream 1286 44373701 ~ 44381036 (+)
AMCG00009689 NA coding downstream 10142 44382557 ~ 44386172 (+)
AMCG00009698 NA coding downstream 67159 44439574 ~ 44442056 (+)
AMCG00009696 flna,LOC108436314,LOC107712729,LOC101154674,LOC107570276 coding downstream 77688 44450103 ~ 44482061 (+)
AMCG00009695 NA coding downstream 111552 44483967 ~ 44490079 (+)
G58513 NA non-coding upstream 4469 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 38958 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 194742 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 437900 43921474 ~ 43926631 (+)
G58317 NA non-coding upstream 448771 43909588 ~ 43915760 (+)
G58527 NA non-coding downstream 40857 44413272 ~ 44483247 (+)
G58666 NA non-coding downstream 520430 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 545628 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 549669 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 770760 45143175 ~ 45143472 (+)
G58324 NA other upstream 428769 43932952 ~ 43935762 (+)
AMCG00009647 NA other upstream 920111 43436990 ~ 43444420 (+)
G57830 NA other upstream 2286290 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 2765407 41596229 ~ 41599124 (+)
G57604 NA other upstream 3369872 40990802 ~ 40994659 (+)
G58522 NA other downstream 14082 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 189362 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 212147 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 260335 44632750 ~ 44651967 (+)
AMCG00009706 pim1 other downstream 377761 44750176 ~ 44760058 (+)

Expression


Co-expression Network