AMCG00009708 (otud5,LOC106571839)


Basic Information

Item Value
gene id AMCG00009708
gene name otud5,LOC106571839
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44738679 ~ 44746329 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009708
ATGACTGCCGATCAAGTATATGGGGACCAGGACATGCACGATGTGGTCCGAAAGCACTGTATGGACTACTTGATGAAAAACGCAGATTACTTCTCCAACTACGTGACCGAAGACTTCACCACCTACATcaacagaaagaggaaaaacaactgCCATGGGAACCACATAGAAATGCAGGCCATGGCGGAGATGTACAACCGGCCGGTGGAGGTCTACCAGTACGGCACAGAACCAATCAACACGTTCCACGGCATCCACCAGAACAACGATGAGCCGATCCGAGTGAGCTACCACCGCAACATCCACTACAACTCCGTGGTGAACCCCAACAAGGCCACGATTGGAGTGGGGCTGGGCCTGCCCGCCTTCAAGCCAGGGGTGGGTACCGCCGGGCAGTACGCAGACCAGTCCCTCATGAAGAACGCCATCAAGACCTCGGAGGAGTCGTGGATCGAGCAGCAGATGCTGGAGGACAAGAAGCGGGCCACAGACTGGGAGGCCACCAACGAGGCCATCGAGGAGCAGGTGGCGCGGGAGTCCTACCTGCAGTGGCTTCAGGACCAGGAGAAGCAGGCGCGCCAGccccgGAAGGCCAGCGCGACCTGCAGCTCGGCGACGGCGGCGGCGTCCAGCGGCCCGGAGGAGTGGAGTGGCCGTTCCCCCCGGCAGCGCAGCTCTGCCCCCTCGCCCGAGCACCCGGAGCCCCACCCCGACGCGGCCGCCaagcccccctcccccgccgGGGCCACCGAGCCGGCGCTGCCCCCCTCGTGTCTTTGTACCCTGCGCTGGACAGGAGTACCTGGACAGCATGAAGAAGAGCGCGGTGCACAGAGCGCCCTCCCCCGACAGCAGCTGATATCCGGGGAGGGGGCCACACCGCCGCCGCCGCCCCAGCAGGACGGACAGACAGCGACCGCCACCACCGCCCGCCCCCCCGAGACCACCCTCCGGACGTCCGTCTGCCCCCCGtcccgccccgccccgccccgcccctcCGCAGCAGTACCATCATAA

Function

symbol description
otud5 Enables Lys48-specific deubiquitinase activity; Lys63-specific deubiquitinase activity; and thiol-dependent deubiquitinase. Involved in several processes, including positive regulation of TOR signaling; protein deubiquitination; and response to lipopolysaccharide. Acts upstream of or within protein deubiquitination. Predicted to be located in cytosol.

NR:

description
PREDICTED: OTU domain-containing protein 5 isoform X2

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K12655 OTUD5, DUBA; OTU domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009708 True 1017 mRNA 0.65 8 44738679 44746329

Neighbor

gene id symbol gene type direction distance location
AMCG00009711 NA coding upstream 26591 44709839 ~ 44712088 (+)
AMCG00009701 plxna3,LOC106572068 coding upstream 71701 44660814 ~ 44666978 (+)
AMCG00009702 NA coding upstream 84931 44648016 ~ 44653748 (+)
AMCG00009703 plxna3 coding upstream 95908 44641950 ~ 44642771 (+)
AMCG00009699 NA coding upstream 236240 44492695 ~ 44502439 (+)
AMCG00009707 LOC107653423,LOC107584890,LOC107743096,LOC107674336,LOC107734533 coding downstream 17707 44764036 ~ 44768228 (+)
AMCG00009709 NA coding downstream 22545 44768874 ~ 44780968 (+)
AMCG00009712 LOC107584919,LOC106904750,LOC106522891 coding downstream 110198 44856527 ~ 44881725 (+)
AMCG00009714 usp11 coding downstream 155097 44901426 ~ 44916843 (+)
AMCG00009715 NA coding downstream 181538 44927867 ~ 44933814 (+)
G58527 NA non-coding upstream 255432 44413272 ~ 44483247 (+)
G58513 NA non-coding upstream 378617 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 413106 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 568890 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 812048 43921474 ~ 43926631 (+)
G58666 NA non-coding downstream 146516 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 171714 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 175755 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 396846 45143175 ~ 45143472 (+)
G58792 NA non-coding downstream 448194 45194523 ~ 45198264 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 86712 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 135070 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 168148 44561777 ~ 44570531 (+)
G58522 NA other upstream 331111 44386497 ~ 44407568 (+)
G58324 NA other upstream 802917 43932952 ~ 43935762 (+)
AMCG00009706 pim1 other downstream 3847 44750176 ~ 44760058 (+)
G58747 NA other downstream 309736 45056065 ~ 45057874 (+)
AMCG00009761 NA other downstream 761438 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 813648 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 826941 45573270 ~ 45575964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003484 otud5b coding NC_007122.7 CM002895.2 25681335 ~ 25689873 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_08745022_08776416 OTUD5B, OTUD5.L, OTUD5A, OTUD5.S, OTUD5 coding CI01000010 null 8744752 ~ 8776987 (-)