AMCG00009761


Basic Information

Item Value
gene id AMCG00009761
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45507767 ~ 45511037 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009761
ATGAACGAAGGATCGCCGGAGGCTCTGGAGAATGGACTTGGGGAGAGAAGGGAGGGGAAGGACAGCAGGGGAAGcccagagggagagggaggagcgGCAGAGGAAGGGGCCGGGGCAGCGAGGGCCCCAGGCGACGGGCAGAGCGGTGCATCGAGGGAGGACGGCACCGCAGCATCTGTAGCAAAGGGGACGGGGGAGAAGGACGATGCCCAGAGACTCGCAGACCCTGCCGAAAACCATGTGCCCACTCAGGAGGGAGCCAGGGAGGAGGAGGTGCAGAAAGAGGGGGAAGCTGCAGCAGGAGGTGGGGACGGGGTGGGGCTGCTGGGAGAGGAGCCCCCCGGTGACCCCTGGTTCAAACCActggaggaggatgaggatgaggaggaggaggaggaaggggctGGGCGGGGTGATACGCACAGCTGGGAGCTGGAGCTGCTGCCCACGGAGCACCGGGCAGACGGGCGCGGGGAGCCGGAGCTGGACAGCGTGGctggagagagcgagaggagcGGCAGTCTGGCCGGCAGCGAGAGGGACTTCAccacaaacaagaaacaacgCCGAGAGAGgtCGTTCACAGGCCAGCGGAGGGGGCGCGGCATGCGTAATGATGGCTGGCAGGACTGGCCCTTGCTGGGACCCGGCTGGAGGCGCAAGGAGGTGTTCCGCAGGTCGGGCTTCACCGTGGGCAAGACCGACACCTACTACATGAGTCCCGACGGCAGCCGCCTGCGCAGTAAGATCGAGATGGCCAAGCACATGGGCGCGGCAATGGACATCTCCAAGTTCGACTTCAAGTCGGGGGTGTTCCTGGAGCGTGGGAGCGTCCTGAAACACAAGCGCCGGAAGAAGCAGACAGACCAGTCCTGGTCTCCAGAGAGCAGCTACTCCTCCGAGAAGATCGGCACCCCTGAGCGCAGCGGCACCCCCGACCCACATTGGCTGTGTCAGCTGTGGGAGCCCCTATCCCGGCATGGAGTTTGTGAGGCCAGGACAGACGTCTCTGTGTGGCAAGTGCAAACAGCTGTACCAGTCCtatgtgtgtgctctgtgtgctggGACACCCCTCAGCACTGTCTGTAG
>TU73602
GGGAGCTGGAGCTGCTGCCCACGGAGCACCGGGCAGACGGGCGCGGGGAGCCGGAGCTGGACAGCGTGGctggagagagcgagaggagcGGCAGTCTGGCCGGCAGCGAGAGGGACTTCAccacaaacaagaaacaacgCCGAGAGAGgtCGTTCACAGGCCAGCGGAGGGGGCGCGGCATGCGTAATGATGGCTGGCAGGACTGGCCCTTGCTGGGACCCGGCTGGAGGCGCAAGGAGGTGTTCCGCAGGTCGGGCTTCACCGTGGGCAAGACCGACACCTACTACATGAGTCCCGACGGCAGCCGCCTGCGCAGTAAGATCGAGATGGCCAAGCACATGGGCGCGGCAATGGACATCTCCAAGTTCGACTTCAAGTCGGGGGTGTTCCTGGAGCGTGGGAGCGTCCTGAAACACAAGCGCCGGAAGAAGCAGACAGACCAGTCCTGGTCTCCAGAGAGCAGCTACTCCTCCGAGAAGATCGGCACCCCTGAGCGCAGCGGCACCCCCGACCCACATGTGCCCACCCCCGAGAGA

Function

GO: NA

KEGG:

id description
K11589 MBD1; methyl-CpG-binding domain protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009761 True 1089 mRNA 0.65 6 45507767 45511037
TU73602 False 536 TUCP 0.65 4 45508194 45509104

Neighbor

gene id symbol gene type direction distance location
AMCG00009750 NA coding upstream 30770 45466659 ~ 45476997 (+)
AMCG00009752 NA coding upstream 53788 45437969 ~ 45453979 (+)
AMCG00009751 NA coding upstream 71902 45422527 ~ 45435865 (+)
AMCG00009753 NA coding upstream 111744 45390752 ~ 45396023 (+)
AMCG00009743 NA coding upstream 118054 45376438 ~ 45389713 (+)
AMCG00009757 NA coding downstream 10316 45521353 ~ 45531436 (+)
AMCG00009763 plxnb3,LOC101165957,LOC102313277,LOC102780548,LOC102199036,LOC101474638 coding downstream 87570 45598607 ~ 45629378 (+)
AMCG00009764 LOC103384391,LOC107373447 coding downstream 132201 45643238 ~ 45647541 (+)
AMCG00009765 NA coding downstream 139047 45650084 ~ 45656237 (+)
AMCG00009762 NA coding downstream 145724 45656761 ~ 45660486 (+)
G58821 NA non-coding upstream 109314 45339605 ~ 45398453 (+)
G58822 NA non-coding upstream 174911 45329784 ~ 45332856 (+)
G58830 NA non-coding upstream 230171 45276488 ~ 45277596 (+)
G58825 NA non-coding upstream 232734 45266939 ~ 45275033 (+)
G58792 NA non-coding upstream 309503 45194523 ~ 45198264 (+)
G58876 NA non-coding downstream 1599 45512636 ~ 45513047 (+)
G58971 NA non-coding downstream 73721 45584758 ~ 45585330 (+)
G59006 NA non-coding downstream 128598 45639635 ~ 45640037 (+)
G59026 NA non-coding downstream 162892 45673929 ~ 45674702 (+)
G59028 NA non-coding downstream 164666 45675703 ~ 45683641 (+)
G58747 NA other upstream 449893 45056065 ~ 45057874 (+)
AMCG00009706 pim1 other upstream 747709 44750176 ~ 44760058 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 855800 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 904158 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 937236 44561777 ~ 44570531 (+)
AMCG00009759 NA other downstream 48940 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 62233 45573270 ~ 45575964 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other downstream 65502 45576539 ~ 45584727 (+)
G59084 NA other downstream 243549 45754586 ~ 45755115 (+)
AMCG00009782 LOC108266008,LOC103385383 other downstream 433595 45944632 ~ 45997710 (+)

Expression


Co-expression Network