G57105


Basic Information

Item Value
gene id G57105
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38442255 ~ 38457592 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71381
GTTTGGAATAACATGCATAACGTACCTGGAATAATCAGGGCAAATGATGTCGCAGAAAaaaaacggggaaaaaaaacaagtcatgCAGCAGCAATCAACAATTTCTAAGTTCAAAAATGTTCGGGAACTGAAGGCGATAAcagcatttctttctttttttctttctttctttttctttttttttttttttttttttaaagagactcCATTCCTGGGAATTCAGCTGATCAGTGAGTGTGTTGCGATGCACGCTGAATTTCTCCCTTCCCCAAGCTTGGTAGAAGGTTCCTTCGCGAAgcttttccccctttttcctCTCAGACTTGCAGAACCCAAAGCTGACCACTGCAAAGGGCACTTGTCAtgcttacagaaaacaaaacacacacacacaagaaaatcaACCTATTGATATCGATGCCGAAAATATTAGTCTCAAGTACCAGAGCCCGTTTCACCGCCAGCACCgcattaaagttaaaaatagcCTTATCATGCTTGCAACCTGCATCACGAACTAGAGCAAATTAAAGCCATGGAGGAAACATCAACTTTATTTAGCATTGTGCAGACTGAACAACCTGAAATGCATTTCGCTTCACGTCAGGTTCTCACatattaaatgaatgcaaaaaagCTGGGATTCACGTCATGCCTCACACGAATGGAGTAGAGATAGCAGACTGCAAagcataacaaatacaatatttcagcTCTGTGCAGGCGACCTTAAATATCTTACAGTACGGTGAAGAATACGCCAGGCACAGAAACCCACAGTTCAGCGAAAgatgtcacacacacatgcacacacatgcacacacatgcacacacacagacacacacacacacacacacacacacacacacacagtatttacATACTCACATCCACAACACCAGAGACgatacagtacaatcaatagAGAGCATGCAGAGACAAGAAGCATTGTTAATCCTGTgtgcctgtctgcctgcctgtctgcctgcctgccattTTAAGCAAGCAGGAGTgcactttaagaaaaaaaaaagaagaagaagcagattACGCTGCAGTAGAAGAACTGTGCAAAGGGAGAAGAGTGGACAATGGACAGGTACCTCAAAGGCTGGCAAATGGACAAAGAAGTGTTTATCGCCATCAGGGCTAAAGTCAGAAGGACCCCTCTTCCAAATGTTATCTGGAGATCGAAGAGAATCCAACACACTATTCTGGGAGCACTCACACGAAATGTTCGAAAGCCATGGAAGAGGAAACCCAATCCAAAAAAGGCAGTGATACAGACAAGGACAAAGACAAAGCATGCATTCTCTCTGATTGACGCATCATCAGTGGCATCCTTTATTCATCACACTGGAAGCTCAAAATGTCTGCAGACCATCTAACACAGGGGTGTCCAACCtcggtcctggagagcccctatccagcaggttttagaggtcacccttgtatcaccaatttataaacccctggaagtatttcattctgatcaatgaAGCAGGTGGTGTGGTAAATTCAGAAATTAGAAACTATTGGAGTAATTATCTGAGTACCTGCAGGATCCTGAGGGAAGGATCCCCTCGTgttgacttgcttaattgattaataactcacatgttcctagtatttagaaattggtgatttaggctGACCTATAAGATTAAGTGGATTGGCTCAAGACCGGGGTTGTACACCCCTGATCTAACACATCAGTAATGGAGATGGAACAGCTGATACCCTGAACTCACCAGTGTTGTGTGTGACAAAACgcattgtaattgtaatgaaTTCATGGATTGTCAATGTTGTGGTTTACATTTGTGGGTTAATTGACTGGTTGCAATTAAATGTGACTGTTTGTGAGTGTCTTTATAACAAAGATTGTAGATAGTAGATCTGattttgaatgaaataaaacttGTGGGGAGtgtatttttaagtgtgtaCTATTCTCTTTTTACATTCAGTTTTTGTTCTGGCTGTTTGCTGCACATATCTGCTCTATTGTTAGCAATAGCCATTGGTTAGTTTTGCTGTCGTGAACCCACAGGCTTGCAGACTTCAAAAATTAAACGCATGAAAACCGCAGAACCCTCCCATTTACTGCAAAAGCAAGATTATAAGATACCTACATATGCAATTCCTATAATGTCTGACAGTTTGTTCTAAACTCCTTTTACACTTCTAGTTTTATGTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71381 True 2204 TUCP 0.41 3 38442255 38457592

Neighbor

gene id symbol gene type direction distance location
AMCG00009457 NA coding upstream 87285 38334048 ~ 38354970 (+)
AMCG00009450 NA coding upstream 200871 38206984 ~ 38241384 (+)
AMCG00009449 NA coding upstream 236171 38194847 ~ 38206084 (+)
AMCG00009442 NA coding upstream 291309 38147975 ~ 38150946 (+)
AMCG00009443 gnb4,LOC108270972 coding upstream 312851 38125308 ~ 38129404 (+)
AMCG00009456 NA coding downstream 9675 38467267 ~ 38474039 (+)
AMCG00009462 trip12 coding downstream 23521 38481113 ~ 38511022 (+)
AMCG00009463 dner coding downstream 84397 38541989 ~ 38583431 (+)
AMCG00009464 pid1 coding downstream 157228 38614820 ~ 38615838 (+)
AMCG00009468 NA coding downstream 198193 38655785 ~ 38729386 (+)
G57036 NA non-coding upstream 161776 38202794 ~ 38280479 (+)
G56995 NA non-coding upstream 308289 38130082 ~ 38133966 (+)
G56982 NA non-coding upstream 374102 38063790 ~ 38068153 (+)
G56775 NA non-coding upstream 1150590 37285843 ~ 37291665 (+)
G56754 NA non-coding upstream 1247167 37193726 ~ 37195088 (+)
G57161 NA non-coding downstream 170327 38627919 ~ 38628135 (+)
G57164 NA non-coding downstream 175505 38633097 ~ 38633351 (+)
G57175 NA non-coding downstream 299788 38757380 ~ 38834945 (+)
G57286 NA non-coding downstream 845745 39303337 ~ 39306230 (+)
G57287 NA non-coding downstream 848896 39306488 ~ 39306774 (+)
AMCG00009428 NA other upstream 825559 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 837131 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 978750 37422017 ~ 37463505 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other upstream 1074584 37348108 ~ 37367671 (+)
AMCG00009404 NA other upstream 1145246 37293903 ~ 37297009 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 977308 39434900 ~ 39437017 (+)
G57430 NA other downstream 1490414 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 1628882 40086474 ~ 40105052 (+)
G57604 NA other downstream 2533210 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 3138637 41596229 ~ 41599124 (+)

Expression


Co-expression Network