G57378


Basic Information

Item Value
gene id G57378
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39806583 ~ 39806928 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71734
tggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggttgggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacgtgcccattgtaggcgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgcggctacgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagca

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: L-2-hydroxyglutarate dehydrogenase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71734 True 346 lncRNA 0.54 1 39806583 39806928

Neighbor

gene id symbol gene type direction distance location
AMCG00009488 NA coding upstream 240297 39560727 ~ 39566286 (+)
AMCG00009490 NA coding upstream 298079 39505934 ~ 39508504 (+)
AMCG00009489 NA coding upstream 303214 39483161 ~ 39503369 (+)
AMCG00009481 NA coding upstream 390987 39409492 ~ 39415596 (+)
AMCG00009482 NA coding upstream 401410 39404329 ~ 39405173 (+)
AMCG00009496 NA coding downstream 496 39807424 ~ 39814778 (+)
AMCG00009499 NA coding downstream 20378 39827306 ~ 39837637 (+)
AMCG00009497 NA coding downstream 32253 39839181 ~ 39843864 (+)
AMCG00009495 atg16l1,LOC107689588,LOC107551872 coding downstream 38481 39845409 ~ 39863181 (+)
AMCG00009498 NA coding downstream 58800 39865728 ~ 39872722 (+)
G57329 NA non-coding upstream 346907 39459398 ~ 39459676 (+)
G57287 NA non-coding upstream 499809 39306488 ~ 39306774 (+)
G57286 NA non-coding upstream 500353 39303337 ~ 39306230 (+)
G57175 NA non-coding upstream 971638 38757380 ~ 38834945 (+)
G57164 NA non-coding upstream 1173232 38633097 ~ 38633351 (+)
G57401 NA non-coding downstream 67953 39874881 ~ 39875170 (+)
G57428 NA non-coding downstream 134294 39941222 ~ 39943036 (+)
G57457 NA non-coding downstream 223618 40030546 ~ 40033333 (+)
G57523 NA non-coding downstream 352481 40159409 ~ 40159626 (+)
G57544 NA non-coding downstream 532454 40339382 ~ 40343381 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 369566 39434900 ~ 39437017 (+)
G57105 NA other upstream 1348991 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2189887 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 2201459 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 2343078 37422017 ~ 37463505 (+)
G57430 NA other downstream 141078 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 279546 40086474 ~ 40105052 (+)
G57604 NA other downstream 1183874 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1789301 41596229 ~ 41599124 (+)
G57830 NA other downstream 2229090 42036018 ~ 42078241 (+)

Expression


Co-expression Network