G57428


Basic Information

Item Value
gene id G57428
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39941222 ~ 39943036 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71800
tgcagtatttttatttgatacgATAGTCaacatttatacaatgcatACGTCATCCATTTACAAATATACTACCAATAAATGAGGtatttttagaaaagaaaaatgatgtgCATTGTTCAACAGAAACCACAGACAGGGCACAGCCAGTAAAGCTAGTGGTCATTGGCCTCCCATTCACTGGCTTTTGGAAACCCACTGGTCAGGAAATGTGGAAATACCTACTCTGGGGTACACCaggaaaaataatgtcatatgGTCTGCAGAGGTCCACACCAGATCTCTCAATGCAGTGTGTGGGGAATAAGGGTTTACGCtcataaacattaataaagaaaCCGCTTATCGTGCTGTTAAAATGCTGTACAAGGCCTCCCTCCCGTATCAAGAACTGGTACGTCTCACTTAGATCACATCCAGGTCATATTTTTGATGCAGGACTAAGAACCTACAGAAAGGGGTTGCAAATGCCTCCACCTTTCCATTCCACTTGAGTTAATttatttgacttaaaaaaaaacatgtttaaaaccaGGATAAACAAGGCAAATGACTGGTAACCATTTAGCAGGTTGGATGTAATTATAGGGGGGGAAATGCACAAAGTGTCAGTCCCATTAATGCAGAAATCTTCAAACATAGATCACTATTCCAGAAGAAGTTTATAAGCCCAGGCTCCTAATTCATTCTGTATTGATCAAAGCATAATTATGCACGAGGACCTCGGCATgtctttaaacaaacacaattatcaTTGGGTTCCTGAGACTGTTTTGTAAACATTATATGTAGCTTTTCGGCATTAAGGATATATAAGCACTAAAATATAGTGTCGTCTGTAAGTACTTTCTATGCATCTAAAACAAACGGAGGGATTCCAAGAGGTCTAACTGACCATTCAAGGTGAAGCTGTAAGTGACTAACTTTcataaaatcaacacaaaatgaGTCCTATTCTCAcgcaattatttttttaatggaacttataataaaaatgtaatacaagcATGGAGATACACATTTCGATATTGACTGTTTGAAACCTCAGAATGTTGTAGAAATCACGTCTCGTCGGTTGAAAAGAACCGACGCAGGTGACGTCACTGGTTGTCCTGAAGTCAGAAGTTAACAGTGTTGCAATGCTGCGTTCGCAATGCAACCCCAGCTCTGTTTAATGGATACCTATcatgtggttaaaaaaaaaatatatatatattgacagaggaaacaaaataaaagcaagtcTTTCTGTCCAGGGGTCTCCAGTAGATCAGAAAGATGAAAGATCTGTCTGACTTCACAGACAGGACTTCGCAGCAGTACTTTGGGCCTGTGCTCCCAGAGGGCAGCAAAGCGGTGAAGGTGGACAGCGTGGAACGTCCGGAGCAAAGAGACACAGGCAGCGCTGCACGACTGCAAGGCTGCCACCGAGCACTGAGGATCTGGTCCAGAAAGAGGCGGAGCAAAATGTGGCTTTGACTGggaacataaaaataaagagtttttacaaaataactgaacaaaaaagaaaaatcacaaaggCATCCTATTCCCTTCAACACTGATCTTCACCGCATGGGCCGGCTTGGTCAGCCGCTTGATGTCGGCGAAACGGCGCATCTGCTTGTCCACCCGTGACATCCCTTTCTTGGTGGGACCCTGTGAAGACAAGCCGTGCATTAGAGGAAGAACGTTCTGACAGGAGGTCCCAGCTGATGGCAGCTCTAGGATTCAAGCAAGCAGCACTTCATGCATTAGGGTCAGGGCCCCACTCAATCAGCCATCGTGGCTCCACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71800 True 1793 lncRNA 0.42 2 39941222 39943036

Neighbor

gene id symbol gene type direction distance location
AMCG00009505 NA coding upstream 2941 39930146 ~ 39938281 (+)
AMCG00009506 NA coding upstream 11089 39922934 ~ 39930133 (+)
AMCG00009504 dgkd coding upstream 19114 39884002 ~ 39922108 (+)
AMCG00009498 NA coding upstream 68500 39865728 ~ 39872722 (+)
AMCG00009495 atg16l1,LOC107689588,LOC107551872 coding upstream 78041 39845409 ~ 39863181 (+)
AMCG00009503 NA coding downstream 24261 39967297 ~ 39982047 (+)
AMCG00009510 polr2d,rpb4,LOC106612892,LOC107671669 coding downstream 79045 40022081 ~ 40025439 (+)
AMCG00009512 NA coding downstream 85756 40028792 ~ 40029460 (+)
AMCG00009509 NA coding downstream 128203 40071239 ~ 40072287 (+)
AMCG00009515 NA coding downstream 197433 40140469 ~ 40142280 (+)
G57401 NA non-coding upstream 66052 39874881 ~ 39875170 (+)
G57378 NA non-coding upstream 134294 39806583 ~ 39806928 (+)
G57329 NA non-coding upstream 481546 39459398 ~ 39459676 (+)
G57287 NA non-coding upstream 634448 39306488 ~ 39306774 (+)
G57286 NA non-coding upstream 634992 39303337 ~ 39306230 (+)
G57457 NA non-coding downstream 87510 40030546 ~ 40033333 (+)
G57523 NA non-coding downstream 216373 40159409 ~ 40159626 (+)
G57544 NA non-coding downstream 396346 40339382 ~ 40343381 (+)
G57597 NA non-coding downstream 886036 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 989931 40932967 ~ 40933210 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 504205 39434900 ~ 39437017 (+)
G57105 NA other upstream 1483630 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2324526 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 2336098 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 2477717 37422017 ~ 37463505 (+)
G57430 NA other downstream 4970 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 143438 40086474 ~ 40105052 (+)
G57604 NA other downstream 1047766 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1653193 41596229 ~ 41599124 (+)
G57830 NA other downstream 2092982 42036018 ~ 42078241 (+)

Expression


Co-expression Network