G57457


Basic Information

Item Value
gene id G57457
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40030546 ~ 40033333 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71839
AATTCTATTGCagtttcatacaaaaaaaatgaacaaaaaaaaaacgatatgACAATCTCTTGACAAACTGTACAATTACAAAGAAACACACTGTCTCTGCACACCCAGAAAGTTGCCTGGCAATGTTACAGAGTCcagtatacttttatttttttttgtggtgttttttttttttttgcttgttttaaaaaggaacCAAAGAAAACTAGGAGTTccgtaaagaaaaacaaacgagAACCCgctgttcttttctttgtaGCAAAATGTGCTCTCCCGGAAAAAACATGTGTAGAATCGGAAACATCAATTACTGAATTTCCTCAGTGAGAACAGAGCCGCAGTGGCTCTCGCGCCACTTTCCTCGTGCAGGATGGACGCGTCCCCCCATTTCAGAACACAGCGAACACCAGCGGCAAGAACTAGAATTAGAGCATCCAGCTGTTGAtttctttctgcatttattcaatttatttacatCTTTTAATCCAATGGCACTTctataaaaagaagaaaggtgAGTGACAGAAAATGTCCGATCGGTTTGTTCAAGGGTGCCAGGGGGCATCTGGGTGTCTCAGGGGAATAAGAGATGGAAATACAACATGGAAAACAGCTGCAGCTGTAACTGCCACCTCATCCACGGTGAGCTGACAAACTCATCCTGTCGATCAATACTCTGTCCTTGGGTTTTATAATTGGGGTGGCTGTCAGGAAGGACAGTCCAAGAATACTGTCAATGGGTGTTGGCCTGAGGTCTGTGACAGTGAGACAGGAAGGGAGAGCACTGAATCAACCTGTGTGAAAATCGTACAACCGAGACTGTGAAACATAACCAAAAAATCAACCATCTGAGCTCGTTTCCATCAACTCATTCGAGATCTCTACGTGTGGAGGTCTCCTTTGTCATCGATGCCAGAGACATCGGTACCGGCGCTCATCCTGGAAGTGTGTGATGAATGGATTAGTGAGGGAAGAGTTAGAACAAGTGGAAAAGGTGGGAGATGAAATGCCGTACAAAGAATTAGAATGGGAGAACACCGATTGCATGACAGTTCGGTGCCAACAGGACAGACAGTGGACAGGCTGTGTGTGAAGACATACCTAACCACTAATTGGACCTGTTCCTGTGACATATAGGGTAAACTGCCTTGGACAGGAGCTTGGGGGTTAATGAGTGGACAGAGGagcaataaacacacagattcacacacacagggagtTTCTGTTTCGAGTCAATTAATCCAGCAGGATGTGGCCCCGTTGATCCCAGTAAAGAGCGCGAGTCCTGTGAGGagcagtgctgtgctgctgcCCTTCTCTGCTAGCGTCCCACCTCTGGAAGGTGCTGCTGCTCTTCCCCACAATCCCACCCCATCCCCCCTGCTTTGAACCTGTCCCCGAGGCCTTAGGATTGTCCCGCTCAAGTCTTCACAGCATGTCAAGAGTGAAACATTGTCCCTCTACCCCCACCGTAGTTCTGTCAGCCCTATCGGCCCCGGCTTCCCCGTGAAGACCCGCGAGTGGAGCCGCGCCGCGCCGGCCCGGAGCTGTTCATGTTCACGGCTGCCCCTCCTGTTCCGCCACGTCCGCCGTCTCCActgcctcctcctccgcctGAACCTCGACCCCAGGTCCCCCTTGCTCCTCGGGACGTGCCCCCGAAGCCGGCCTCTTCTCTGTGCGAGTCTCCGTCCTGAGAGCCGGACCTGCCCAGCTTCATCCCGCGCTGAGAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71839 True 1735 lncRNA 0.49 2 40030546 40033333

Neighbor

gene id symbol gene type direction distance location
AMCG00009512 NA coding upstream 1086 40028792 ~ 40029460 (+)
AMCG00009510 polr2d,rpb4,LOC106612892,LOC107671669 coding upstream 5107 40022081 ~ 40025439 (+)
AMCG00009503 NA coding upstream 48499 39967297 ~ 39982047 (+)
AMCG00009505 NA coding upstream 92265 39930146 ~ 39938281 (+)
AMCG00009506 NA coding upstream 100413 39922934 ~ 39930133 (+)
AMCG00009509 NA coding downstream 37906 40071239 ~ 40072287 (+)
AMCG00009515 NA coding downstream 107136 40140469 ~ 40142280 (+)
AMCG00009514 rpp21,LOC107653575,LOC107588084 coding downstream 139633 40172966 ~ 40179050 (+)
AMCG00009525 LOC106584350,LOC105907042,LOC106599532 coding downstream 155808 40189141 ~ 40203113 (+)
AMCG00009524 NA coding downstream 179315 40212648 ~ 40220369 (+)
G57428 NA non-coding upstream 87510 39941222 ~ 39943036 (+)
G57401 NA non-coding upstream 155376 39874881 ~ 39875170 (+)
G57378 NA non-coding upstream 223618 39806583 ~ 39806928 (+)
G57329 NA non-coding upstream 570870 39459398 ~ 39459676 (+)
G57287 NA non-coding upstream 723772 39306488 ~ 39306774 (+)
G57523 NA non-coding downstream 126076 40159409 ~ 40159626 (+)
G57544 NA non-coding downstream 306049 40339382 ~ 40343381 (+)
G57597 NA non-coding downstream 795739 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 899634 40932967 ~ 40933210 (+)
G57690 NA non-coding downstream 1466631 41499964 ~ 41500218 (+)
G57430 NA other upstream 81346 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 593529 39434900 ~ 39437017 (+)
G57105 NA other upstream 1572954 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2413850 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 2425422 37530822 ~ 37605124 (+)
AMCG00009516 NA other downstream 53141 40086474 ~ 40105052 (+)
G57604 NA other downstream 957469 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1562896 41596229 ~ 41599124 (+)
G57830 NA other downstream 2002685 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 3403657 43436990 ~ 43444420 (+)

Expression


Co-expression Network