G57544


Basic Information

Item Value
gene id G57544
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40339382 ~ 40343381 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71954
TTGGACTCTGATCATATGGAGGTGTGCCAGCTCAACAAggctgtctttttttctttcatttaaccTGCTGCTTCTCAGGCTGCTCTGCATTCGCTTGGAAACAGGGGCCTTctaggagaaaaaataaaaaccacagagAAAGGCATCTTCTCTTCATGTACGCTCGAGCTGCTGTAATCCCTTATTCCAAATCCAAAGTGCTTCCTGGTCGGACCGCCCTGTTGCTCCGTCGCTCCGTCACCACAGCCTCTCAACAACACCCGAGGCCCGGCCCTTGGCACTGGCTGCTTGTATGGGAAGAGAACTGGTTGATTCGATTATAGgttgttctgtattttgtattgttctgtttCAGGCTAATGAGATCCCTCATATATCTATAAAAGATAAGCCTTCCACAATACAAGCTTTGGATACTCCCGCCATATGCTTAAACCTTAAAGTCTCCTTCACTGCTGCTACTAGATGGAAACAGTTTTCCACTTCAGCAAGGCTTGgtacagcattttaattttagttttgagCTGTTTCCGAGATGGTGAGATACAGAGACCACTGACAGGAGGGTGAACAGAAATCTGTTGATAGAGGCCTCCAGTttgagtttctttttaaatatgctcTTTTACTTCTAGggtttgaatgcatttttgcactttagATTCCCCTTTAAGTGATGACTTGCATACATTTAAGATTAAGGGCAACCAGGTGGCAGCCAAATCACCCCCGTGCACATCTACACCCCTCTCTATCCCCTTCAGCGCGCACTTCAATATGACCAGGCAGAGTAACTCTCCTGTCGTAATGGTATCTCCCTTGCTTTACTGTCAACCCCCTTTTTTAACAGTGGAGGATTAACCCACAAAGACAGTGTCCCTCTCCGGTGCTGCCCCATTTTCCATCTGATTTTTTCTAGTTTGCATCCAGTCACAGCATGGCACTGTTTTGCTTCACCGGGCAATGCCACGGCAAAGCTGTTGCCCTATACCAAACACCCCTCTTGTTGTAATCTCTCAGCATCCATCGAGGGGTGTGTCACTAGCGCACCGATAGAAAAATAGATGCATCATCATTTGTATACTTTGAGAGCCTACAGCTTAGGAATCTGCTCTCAAATCTCCTCCAACAATCTCACAAACGATCTCCATTTAGAGATAGAGTTGCAGTTGTGTTAATGCTTTGCCTTTTCGTCTGTACAACATATTAACAAAACGTGAACAGGATTACACAACAGTATTACTTGTGGTGCTCCTAGGCCCCCTTTAACTTACAATGTGGTGGCACAGGGTGGCCTATCAAAGCACAGAGATCTGTGGCAAAATCAGTGAACGTGGCTGGAAATGCTTTTCTTAGTCGGGTTCCATAGATCGCTATGAAACTAATGGCAACCATCTTATATCGTAGTATATTCACAATTCAGAAGTAGTGTCACTGTTTCCAACTACCTAATAAACTtaggtaaaataaatgaaatgggaATGATTGTCCTGCTGACAAAACCCACAAACACCATTTCACTTCAACTAAGCATCAGAATTTATTCAAACTATTGCTTAATCAGTGCCAAGTGTACTGTGATTATAAGGACACTGGGCTCTGGTACAATCTCTCCTAAACAGCTTTTGAGAGACATTTTCCACCTAAGGTCAAACCCTTTCTATACACTTGATGTCTTTTTATCATGCAAATGTGTCTTCTTTGTGGTCTGACTTTCTTTCTTGTTATCGTCGCTGAATGCACACTGACGCATCGGCACAATGGCACTTTGTGGGTAGAGAGAGCCTACGGGGAGTGAACAGTCAGGTGCAGATACGCCAAAATGCCAAGCAAGTCACCAGGCTCAGAACAAACAGGAAGCCGTGACTGACAGCTCGCAGGGCACAAAGGCGACAGAAATGCACCTTTCCCAAACCGCGATCTGCGGAACGGTCACTGTAAGATTCCCACTTTGCTTGGCAAAAAAAGTAGTTTAAATAGGCTGGAGCTCCGGTACATCCCTATATACCAGATATACAAATAATAGAGTGTGTAGCTTGGCACTGGGGTGGCTGGCCGATGTTTATGCCAGCGTTTTTCTTGAAATGCCCATTGCTTGAAAtccgtgtgtgtgtctttcccGTCGTTTTGAATTCCCCTAGTTTTCCCTATattttgctgtgctttttctatttctttacaCATTTTGCCTTTGCTATACTCACACGGTCTTCACTTTACTGCTGCTATGATTAATTACTCACTTGGTTGTACGGGGCTGGTttatgtttccctttttttcccatttcttaatttttcatACTTAATTCAGTCTAGTTACTTTCTTCTTTCTGTAATCTGAGTCAGCATCTCGCAGTATAGAAATTCGGTTGTTTTTCCCCACAAATGAAAAGTGTAAAGTCTTTTCATTAAATTTCATCATCCTGATAGCTGTGGGGGAATAATATGTCGGGGACGTATTTCAGGAGCACATCAGGGACTTCCAGAGTATTCTGCAATGACCATGTCTTGCTTGCCAGTGACTGGTTTTGAGGCAGTGCATTGGGCATGGCGCTGGCCAGTGTAGGACAGAAGTGAAgtgcaacacaaatacataaggACTCAGTGGGTGTTTTTCTCTGAGCCACACGTGGCAGCGTCCGCACCTCCCCTGCAGATCAAACCACACATTAACAGGCATGAAACCCAAGATCAATATCAGACCAGTCTCATGCCTTCTCTACAGAAATAAACTATGATCACGCAGGAGTCACAATGCAAACTCTCTCCAGTgctttctcctgttttccaaGAGCAATATATTGAAAGAATGCAAGTCTGAACGGTGGCCTGAATCTACAGTCATAAACACTTGCAGCAGAATTCTACGCCCTTCGAAACACAATAAGCAcgtatttttgcttttttctccacacaaacaacaatatttaaaaatcaaagcaTCACGTATCCTTAAACGTTGTTTTTTTATCACTATAGCCTTTcagattatatgtattttatatgaactggtgttttccatgttttttttgtttgtttgtgttttacagtatttcattatatttcctAACTTGTTCTCTTAATCTGTGTaaacagtttggagtttgtaATCCTATGTTCATGCGTGTAACATGCctcctgctttttttttaaactgtgccATGTAATGCTGCCAGGCTTTGCGGCGAGCTTTGTGGGGTTTACACCCCGACCCATTTGAAATGCACGCACAAACAAGGTTATTCTTCTAAAAACGACACTTCAAATGACTTCAGACTTACATATGTGGATAATATCTTGTATAACATAatttctttttagtttattttttctgtcatgTGATGTTTGTCAGTTCTGTACTTCACCATGTATTGTGTTCCATATAAGTAGCTTGTACAGTACTGGAGATTTATATATAGAAGatgtatgtaaatacatatatttatatatacagtataggaTGACAAGGGTTTGACCTGTGGGTAGTGTATAAAATGTTGATCTCATGATGTTGTTGGGCTGTAACATGCGACGAGGATGTGAACCGGCCGAACTGTACGAAACCGATTTCCCCCAGGCAGCTCGCTTGGCAGAAATCGACTAAAccctgacaaaaacaaaatctgcttaCGTTTTCACCCGTTTCTTTCCATGAACATCCTTCACCCGCATCACATGTGCAAAGACCACTTACATAGCATgtgtacaaatgtatatattttaagtcaCTCACCATTTTTTAAGagaagaacaaacacaacatgAGAATATGTGTCCCGGGAAGACTTCATTACAAGTGTCAGTTGGCTTTTCTGAACTCCTTCCCTGGGTTGTCAGActtgggtttctttttcttcctccctGCCTCTGTCATAATAAGAAAACCTCTTGTTAGAGATATCTCCTGTATGGGCAGATGTGTGTTGCCCTCCCCTGCCTTCTTATGTCTTTCTAAACACACAGGTCTCCATGTGCTCATCTCCgggtttctaaaataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71954 True 4000 lncRNA 0.42 1 40339382 40343381

Neighbor

gene id symbol gene type direction distance location
AMCG00009524 NA coding upstream 119013 40212648 ~ 40220369 (+)
AMCG00009525 LOC106584350,LOC105907042,LOC106599532 coding upstream 136269 40189141 ~ 40203113 (+)
AMCG00009514 rpp21,LOC107653575,LOC107588084 coding upstream 160332 40172966 ~ 40179050 (+)
AMCG00009515 NA coding upstream 197102 40140469 ~ 40142280 (+)
AMCG00009509 NA coding upstream 267095 40071239 ~ 40072287 (+)
AMCG00009530 NA coding downstream 68832 40412213 ~ 40420872 (+)
AMCG00009529 NA coding downstream 92946 40436327 ~ 40441597 (+)
AMCG00009526 NA coding downstream 105438 40448819 ~ 40462899 (+)
AMCG00009533 LOC107384019,LOC106568850 coding downstream 263755 40607136 ~ 40608113 (+)
AMCG00009534 LOC106599529,LOC105018039 coding downstream 301013 40644394 ~ 40652818 (+)
G57523 NA non-coding upstream 179756 40159409 ~ 40159626 (+)
G57457 NA non-coding upstream 306049 40030546 ~ 40033333 (+)
G57428 NA non-coding upstream 396346 39941222 ~ 39943036 (+)
G57401 NA non-coding upstream 464212 39874881 ~ 39875170 (+)
G57378 NA non-coding upstream 532454 39806583 ~ 39806928 (+)
G57597 NA non-coding downstream 485691 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 589586 40932967 ~ 40933210 (+)
G57690 NA non-coding downstream 1156583 41499964 ~ 41500218 (+)
G57770 NA non-coding downstream 1406174 41749555 ~ 41750144 (+)
G57775 NA non-coding downstream 1472540 41815921 ~ 41817795 (+)
AMCG00009516 NA other upstream 234330 40086474 ~ 40105052 (+)
G57430 NA other upstream 390182 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 902365 39434900 ~ 39437017 (+)
G57105 NA other upstream 1881790 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2722686 37608305 ~ 37616696 (+)
G57604 NA other downstream 647421 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1252848 41596229 ~ 41599124 (+)
G57830 NA other downstream 1692637 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 3093609 43436990 ~ 43444420 (+)
G58324 NA other downstream 3589571 43932952 ~ 43935762 (+)

Expression


Co-expression Network