G58792


Basic Information

Item Value
gene id G58792
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45194523 ~ 45198264 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73492
TAcagcaggtttatttatttattgtttatttcaatttgaatcTGTGAAAAGATGGACTGACTCGCTGTCCTGCACTGGTTTTGCACTGGTTTTGCCCCGGGCGGTCAGTGTGCAGCTCCGTGCACAGCGTGCGTTACCTGCGTCCTGCTCTCCGCCGGGCTGTACCCTGATGACGGCGGGGCACCTTTAAGAGCCAGGCTCCGCCCAGCGCGCTGCTCAGGCCgggctgtctctctctgtctctccggGGGTTTGGGAGTCGGGCTGGGACTGAGCGGAGTGAGTGCGCCGCGgtgcagtaaagtgcagtaaagtacagtaaaagtgCAGCCGGGACAGTAGGTGCGCTGCGTGTCTGTGAACTTTTCGGGAGGAACAGAACCGGCGGAGACGGACCCGTCAGCAGAGCCGGTTAAACAGCGCAGCTCCCGCCGCTCTGGACGCGGCCCATGCGGGAGCCGAGCCGCTATGTTCACCCGCGGGTCCCGAAAGCGCCGGTCCGGCCGGGCGGTGAgagcctgtctgtgtgtctgtccgtctgtgtgtctgtccgtctgtgtgtctgtgtgtgtgtgtgtctgNNNNNNtgtgtgtgtgtgtgtgtgtgtgaggcagcGGG

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73492 True 619 lncRNA 0.60 2 45194523 45198264

Neighbor

gene id symbol gene type direction distance location
AMCG00009737 NA coding upstream 6411 45187220 ~ 45188112 (+)
AMCG00009738 NA coding upstream 9791 45175166 ~ 45184732 (+)
AMCG00009729 LOC108228711,LOC105898895,LOC107731232,LOC103365588,LOC103384398,LOC101079199 coding upstream 25240 45139540 ~ 45169283 (+)
AMCG00009731 NA coding upstream 57665 45135424 ~ 45136858 (+)
AMCG00009727 NA coding upstream 75337 45115663 ~ 45119186 (+)
AMCG00009735 prickle3,LOC102790576 coding downstream 14303 45212567 ~ 45220687 (+)
AMCG00009734 NA coding downstream 37903 45236167 ~ 45241904 (+)
AMCG00009736 NA coding downstream 53671 45251935 ~ 45254181 (+)
AMCG00009749 NA coding downstream 111293 45309557 ~ 45312392 (+)
AMCG00009743 NA coding downstream 178174 45376438 ~ 45389713 (+)
G58776 NA non-coding upstream 51051 45143175 ~ 45143472 (+)
G58668 NA non-coding upstream 270823 44922084 ~ 44923700 (+)
G58660 NA non-coding upstream 272886 44918043 ~ 44921637 (+)
G58666 NA non-coding upstream 301445 44892845 ~ 44893078 (+)
G58527 NA non-coding upstream 711276 44413272 ~ 44483247 (+)
G58825 NA non-coding downstream 68675 45266939 ~ 45275033 (+)
G58830 NA non-coding downstream 78224 45276488 ~ 45277596 (+)
G58822 NA non-coding downstream 131520 45329784 ~ 45332856 (+)
G58821 NA non-coding downstream 141341 45339605 ~ 45398453 (+)
G58876 NA non-coding downstream 314372 45512636 ~ 45513047 (+)
G58747 NA other upstream 136649 45056065 ~ 45057874 (+)
AMCG00009706 pim1 other upstream 434465 44750176 ~ 44760058 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 542556 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 590914 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 623992 44561777 ~ 44570531 (+)
AMCG00009761 NA other downstream 309503 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 361713 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 375006 45573270 ~ 45575964 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other downstream 378275 45576539 ~ 45584727 (+)
G59084 NA other downstream 556322 45754586 ~ 45755115 (+)

Expression


Co-expression Network