AMCG00010218


Basic Information

Item Value
gene id AMCG00010218
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 19189882 ~ 19229691 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010218
CGAGCGCGCAGCTCCGCCCTCCACACACAGCTGCGATGCTGCGTCAGCGTCCTGGTTAAAGGGCTCGTTTCCCGCCGCGTCCCGGGCAACGGCGCCGAGCAGAGCAAACCGCTGAAGCATCGAGGGCGGCCTTCATGTGTCATCTACATACCAAATATGGTTCGGATTGAAAAATCCCCTGGCTTTGGCCTTTCGTTGGTGGCTGAGACTATAAATGGAACGTTCCTCAGTGCTGAACTGGCTTCCAACCCACAAGGCCAAGGAGACCCAGTTCAGCCAGAAGACCTCGGGAAGAACTGTGCCAAACTCTTGCTGGAAGAAATTTACAGAGTAAATTTTGAAGCCAGCTTCATAAGACTGATGGACAAAATAACCAACGGCACAACGATTGAAGTCAATCAAAcaggtACTGCCCTGTTTTATCAGCCAGGGCTTCTGTATGGAGGAGCAGTGGAGCATGATTGCAACCTCCAGCGCTCCATTGGCTACTACCTGGAACCTCTACTCGCATTGGCTCCCTTCATGAAGAGTCCAATCAGGGCAGTCCTGAGAGGCGTGACCAATGACCAGAAAGACCCATCTGTGGTGAAAAGAGGGATGCCCccaggtggaggaggagaggtGCTTTTTACCTGCCCTGTGCGGAGATGTATTAAGCCAGTGCAACTCTCAGACCCAGGAAAAATCAAGCGTATCCGAGGAATAGCATATTCAGTGAGAGTCTCTCCACAGATAGCAAACCGAATGATCGACTCAGCCAGGAGCATCTTAAACCTGTTCATTCcagacatttatatttacacagaCCATATGAAGGGAGTTCATTCTGGAAAGAGGCCCGCAGGTGCTGGCTGTCGGGCGCGTCTCCTCCTCCGCGCCGCTGTGCTCGCCCCCCGCCTGCACTCCGGTCACACGCTGCGGGCCGAGGAGACG

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005730 nucleolus cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010218 True 933 mRNA 0.54 7 19189882 19229691

Neighbor

gene id symbol gene type direction distance location
AMCG00010214 NA coding upstream 70801 19116735 ~ 19119081 (+)
AMCG00010213 NA coding upstream 81785 19102868 ~ 19108097 (+)
AMCG00010212 NA coding upstream 109166 19070927 ~ 19080716 (+)
AMCG00010202 nop56,LOC107661748,LOC107739720 coding upstream 308091 18874762 ~ 18881791 (+)
AMCG00010203 NA coding upstream 323391 18851157 ~ 18866491 (+)
AMCG00010217 NA coding downstream 171 19229862 ~ 19245933 (+)
AMCG00010220 gak coding downstream 48653 19278344 ~ 19326725 (+)
AMCG00010221 acaa2,LOC107752996 coding downstream 109048 19338739 ~ 19360722 (+)
AMCG00010223 kcmf1,LOC107684340 coding downstream 217646 19447337 ~ 19460145 (+)
AMCG00010228 mapk10,LOC107719076,LOC107749009 coding downstream 481636 19711327 ~ 19721563 (+)
G78774 NA non-coding upstream 176124 19013402 ~ 19013758 (+)
G78772 NA non-coding upstream 179783 19006289 ~ 19010099 (+)
G78760 NA non-coding upstream 218168 18971295 ~ 18971714 (+)
G78758 NA non-coding upstream 226157 18963523 ~ 18963725 (+)
G78682 NA non-coding upstream 739073 18450490 ~ 18450809 (+)
G78939 NA non-coding downstream 260966 19490657 ~ 19494085 (+)
G79081 NA non-coding downstream 1052668 20282359 ~ 20282722 (+)
G79091 NA non-coding downstream 1237618 20467309 ~ 20467696 (+)
G79109 NA non-coding downstream 1401521 20631212 ~ 20631454 (+)
G79113 NA non-coding downstream 1427658 20657349 ~ 20657834 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other upstream 5813 19138003 ~ 19184069 (+)
G78794 LOC107575789 other upstream 102128 19087329 ~ 19087754 (+)
G78743 NA other upstream 268438 18919911 ~ 18921444 (+)
G78410 NA other upstream 1836394 17344419 ~ 17353488 (+)
G78396 NA other upstream 1911884 17274387 ~ 17277998 (+)
AMCG00010224 NA other downstream 374927 19604618 ~ 19629439 (+)
G79382 NA other downstream 2816427 22046118 ~ 22047542 (+)
G79420 rpl17,LOC107579731 other downstream 3128278 22357969 ~ 22378809 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other downstream 3470051 22699742 ~ 22703409 (+)
AMCG00010292 rchy1 other downstream 4086324 23316015 ~ 23329546 (+)

Expression


Co-expression Network