AMCG00011313


Basic Information

Item Value
gene id AMCG00011313
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17717626 ~ 17751099 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011313
ATGTGGGAAGAGTACCTGTCCATCAGCAGACCAGGCCAGGGAGGTACACTGGGGGGGCTCGGCCTTGCTGCTGGTGCTGATCACCTCTTGTCTCAGCTCATCCACAATGATCTTGCCTTCCAGCGGCTCCAAGAGCGGATAACTGGCATTAATGCCCAGAACTGCAAGATTCCCACCGACGCTTACCCAGATCTTGATGCTGGGGCCAGTGGCAGCACACAGCCAGTATCTGTTGGGGCTGAAGCACAGAGCACTGATGGTGTCTCCGCCATCCAGGGTGTAAAGATGCTTGCCCTCGTTCAGGTCCCACAGCATTGCCTGGCCGTCCTGCAGAGGAGAGGATGCAAGAGCAATGAGGCACACAGGGAGCCATCGGGGGAGACAGTGACGGTGTTCAGGAATCCGGTCCCAAAGGCGCAGGGTGCCATCCCAGGACCCAGACAGGGCGAACTGTCCGTCAGAGGAGATGACCACATCACTGACAAAGTGCGAGTGACCACGCAGGGCTCGCTGGGGGATGCCATAGTTGGTTTCATCACGTATTTCAAGGGCGAATCCTTGACTGTTATGGCAGCACCTCCAGACTCCCTTGTGGCAGGAGCTTCTGGGATCGATGGGGAAAAGGGTCCCAAGGGCTCAAAAGGAGACAGTGGAAGTCATGGCATACCTGGCTATAAAGGCGAGAAAGGGGAGATGGGACTGTCCGGGCCTGCGGCTCAAATGATCTCCCAACCTGGCCCCCCTGGCCCACCCGGCCCCCAAGGACCCATGGGTGATCCAGGCATGGACGGActcaagggagagagaggagacactgGAGAGAGGGGCCCCATTGGACTGCGAggCTTCCCTGGACTTCGGGGTGAAAAGGGTGATCGAGGACTAAAAGGCGAGAAGGGGGTCCTCTGGGTCCTGGGGAGCCAGGAGGGCCAGGGGGACCAGGGGGGCCAGCCTGTCCTTGATCACCctgagaacgagagagagacgTATTACACACCAAGAGTACCGGGATTTACCTTTTAA
>TU132302
CTCTAATTCAACATGTTTCCAgtatttttattaagaattgTATTAAGTTtaggaaaactgaaaacaaacctcCCTCTGATTTTGATGCACTGTCACCAGAGATCAACCACTACTAAACAAATGCTCAGGAAGATACACCAGGACCAACCACTGTGCAGGAGAAATGCCACACTCCCCCAGCCATCCACGAGATATTACACTGTAAAGAGCTGTATTTTGTATCTActgcacagaaaacatttagaaatgtatggTGTATTTCTTCAAAAATATACAGACCATTTTGGCAAAACTGGACATTTCTACTTCAGATATTACAACCTTTGGGCAACAcctattttggaaaacaaaaccttgcCAACGAACTCCAAAagataaatactttaaatagatAACCATCATAACTATGGAGTTTATATATTGTTAGaattatatttcacataacACTTGCTACAAATAACTGAGGATGACTTCTCAAGTCACTGAAaattatttctttgcagacacccttatccagggtgacttagaaaatatgtacatgttgtatatacatgtttataataGAGATGGGAGATCaaaaggttttgaaaatgtagttCTACACCTTTCTCCCAAGTGAACTGTGTTGTTCCTATGCCCCCAGGttgagattatatatatgtaatacagACGCATGAACTTTTCAGACAgcagtttaatttcaatatCATTTAGCAACCAAAAAAGTGCCTTTTTTTCCTAGGCACTTCTTCCAGcagtacaaaacaaatccaGTATTAGAGAAGTGGATCAGCTGCCAGATGGGTAAACAGAgaaaaattaagaacaaaaacaccagatctttttttttccggttatttattttttatttcaaggcTGACGGGATTTTCAGTTCTCTTCATTTTCTTAGAAAACATTTATCGGGTTCCGATGGTCACCTGCCACACTCTGATCAGGTTGTCAGTGTAGCCAGCAAACAAAGTCTGGAAgatacaaataaagcatttaaaaccaTATACAGTAATTTCCTGCATACACACCATCTGATTACTGGAGTTCAAAATTCACCCTGTAAGAGCATCTGATTAGACATTATAAAATGAGTTCAAAGGTCTATTACCACCCCCTCATATTTGCAGGACTTGTCACCAGTAAAATTCAGTAGTATCGTGAAAGGTTAAAATCATAGGGGGTACTCGGGCAACTAATTATGCatatttcatatacaaaacCAGATACTTCAATGTCAGGAAATGCACACTATTGTATCTGGTACTCTTAgctcaacattttaaaataaatgccaaacTGATTATAGAAGAGTAAGGCGATAATTTTAGTATGAATCAATCAATGCAAGTGGTATGGCAGCTGCCAACACCTGTGATCTAGTTCCAAGATACCTGACCCTGGAAATATTGTAATACCACATATGTGACTAATGACAACAATGTGGGAAGAGTACCTGTCCATCAGCAGACCAGGCCAGGGAGGTACACTGGGGGGGCTCGGCCTTGCTGCTGGTGCTGATCACCTCTTGTCTCAGCTCATCCACAATGATCTTGCCTTCCAGGTCCTGGAAAAAAAGGGCACATTTGAATCTTAGTGAGGGTATAACTCAATAAGAGCTAGCACAACAAGGAGTTTATAATCCACAAACCACTCTTTTAGCTTTTTACTccaattatattgatttaagaTTGTTGACAGATAACTGAAGGCAGACAATAGTTAATAAACTATTGTCATTTGTTGTAATGACCAAATAACTGCACTCCACACTCAATCTTCATTgagcagaaaaacacagaagttTGCTCAGAAACAGCCTCTTTATCATCATAGAATTACAGATGGCATTTGTAAGTTTCATCACTGCCACTTTGTGTTTCCTAGACAGTACAATGTAGACAAAGTACTGCTAATGCTAAAAACCTGATGCTGAATATTAGAACTTCAATATTGAATCATTTAACATTTGTACTAGACTAACAATCAGCATAACTTAATGCTCATTTCCATTTTAGTGCGCTATTCTAATGGGAGAACACGTTTTCCTGTTGACAGCGGCTCCAAGAGCGGATAACTGGCATTAATGCCCAGAACTGCAAGATTCCCACCGACGCTTACCCAGATCTTGATGCTGGGGCCAGTGGCAGCACACAGCCAGTATCTGTTGGGGCTGAAGCACAGAGCACTGATGGTGTCTCCGCCATCCAGGGTGTAAAGATGCTTGCCCTCGTTCAGGTCCCACAGCATTGCCTGGCCGTCCCTTCCCTCCAGAGGCACACAGGGAGCCATCGGGGGAGACAGTGACGGTGTTCAGGAATCCGGTGTGTCCAATGTGGTTGGTCTTCAGCTTGCAGTTAGCCAGGTTCCACACctattaatataaacacacaccagCTATGTCAAACGATCACAAGCAACTCACTGTCCATACAGACCAAGCTATAGTCAAATGCACCATCCTAATATAAAGTCGCATCCCATCATAATTGCAGGACTTGTCATCAAAACCTCACAGTTCAGACAATCAAATTGTGTCTTGTGTAATCACTGGGACAAAGCATCAACGAATCCCTACTAcctggagagaagagagagatgtGTACCTTAACCATCTTGTCCCAGCCGCAGGACACAATGATGGGGTTGCTGCTGTTGGGAGAGAAGCGCACACAGGAAACCCATTCGGTGTGGCTTTCATCCTGTAACAGAGAGATTTCACCATTTAGAAAAGTCAAGACCTATTTCAAAGCCAGGTAATTAAGACTCACTCCAATGTGTGCATTATCTCCTTTCAGCATTATTATATCAGGTGGATACAACTAAATGGTGCAAAATtgtaagttaaaataaaatgaatcactAACCCAGACTTAAGCCATTTATAGTCATTACACATCCCTTCATAATTGCAGGACTTGTCATCAAAACCTGACAGTTCAGACAACAAAACTGTGGTTTGTTTAATCATTGGGATGAAGACATGCTTAAACTTCTgttacatgcatttaaaaagtcattCAGTTTCAGAGTGGATGGAGCATGAGTGGagttgctttaaaataattgtaaggCAACTAGAACTGGGAATTTCTCCCTTCATACAATATCTGAAATAAA
>TU132306
CTCTAATTCAACATGTTTCCAgtatttttattaagaattgTATTAAGTTtaggaaaactgaaaacaaacctcCCTCTGATTTTGATGCACTGTCACCAGAGATCAACCACTACTAAACAAATGCTCAGGAAGATACACCAGGACCAACCACTGTGCAGGAGAAATGCCACACTCCCCCAGCCATCCACGAGATATTACACTGTAAAGAGCTGTATTTTGTATCTActgcacagaaaacatttagaaatgtatggTGTATTTCTTCAAAAATATACAGACCATTTTGGCAAAACTGGACATTTCTACTTCAGATATTACAACCTTTGGGCAACAcctattttggaaaacaaaaccttgcCAACGAACTCCAAAagataaatactttaaatagatAACCATCATAACTATGGAGTTTATATATTGTTAGaattatatttcacataacACTTGCTACAAATAACTGAGGATGACTTCTCAAGTCACTGAAaattatttctttgcagacacccttatccagggtgacttagaaaatatgtacatgttgtatatacatgtttataataGAGATGGGAGATCaaaaggttttgaaaatgtagttCTACACCTTTCTCCCAAGTGAACTGTGTTGTTCCTATGCCCCCAGGttgagattatatatatgtaatacagACGCATGAACTTTTCAGACAgcagtttaatttcaatatCATTTAGCAACCAAAAAAGTGCCTTTTTTTCCTAGGCACTTCTTCCAGcagtacaaaacaaatccaGTATTAGAGAAGTGGATCAGCTGCCAGATGGGTAAACAGAgaaaaattaagaacaaaaacaccagatctttttttttccggttatttattttttatttcaaggcTGACGGGATTTTCAGTTCTCTTCATTTTCTTAGAAAACATTTATCGGGTTCCGATGGTCACCTGCCACACTCTGATCAGGTTGTCAGTGTAGCCAGCAAACAAAGTCTGCCATCAGCAGACCAGGCCAGGGAGGTACACTGGGGGGGCTCGGCCTTGCTGCTGGTGCTGATCACCTCTTGTCTCAGCTCATCCACAATGATCTTGCCTTCCAGGTCCAGATCTTGATGCTGGGGCCAGTGGCAGCACACAGCCAGTATCTGTTGGGGCTGAAGCACAGAGCACTGATGGTGTCTCCGCCATCCAGGGTGTAAAGATGCTTGCCCTCGTTCAGGTCCCACAGCATTGCCTGGCCGTCCCTTCCCTCCAGAGGCACACAGGGAGCCATCGGGGGAGACAGTGACGGTGTTCAGGAATCCGGTGTGTCCAATGTGGTTGGTCTTCAGCTTGCAGTTAGCCAGGTTCCACACctaACCATCTTGTCCCAGCCGCAGGACACAATGATGGGGTTGCTGCTGTTGGGAGAGAAGCGCACACAGGAAACCCATTCGGTGTGGCCTTTACCTGGATCGTGTACTTGCAGACTCCAAGGGTGTTCCACAGCTTGATGGTCTTGTCACGAGAACCAGACACAATCTGACGGTTGTCTGCAGAGAAGGCAACACTCAGAACATCCTTGGTGTGACCAACAAAGCGACGGGTTGTTGTGCCTTTGTCAGGTCCCAAAGGCGCAGGGTGCCATCCCAGGACCCAGACAGGGCGAACTGTCCGTCAGAGGAGATGACCACATCACTGACAAAGTGCGAGTGACCACGCAGGGCTCGCTGGGGGATGCCATAGTTGGTTTCATCACGTGTGAGTTTCCACATGATGATGGTCTACCTCTAGATGCAGAGAGAATCATGTCAGGAAATTGCGGGGTTGTGGCAATCTGGGTGACCCAACCATTATGCCCCTTAAGGGTCCCCCTTACAGTCATCTGCTCGGTCATTTTGGCGAAGATACACGGTGCCTTTCAGGGAGGATGGAGTCGGATTGAGATCGGAGGCTTTAGCCGCCCTGTTCCTCTCACATACAGGCACAGGGAAAGAGGAAGAGTCGACCCGGAAACAGAACTAAAAGAGAAGCGCTGAGGCGAACGTATT
>TU132307
CGCATATTTTGAGTTTGTCAATTGAGTAGATCTTGATAAACTTAATTCTGTAATTGGAACTTTTATCTGTGTAATAGGGAGAGTTGGGTTTACCAGGAGCTTCTGGGATCGATGGGGAAAAGGGTCCCAAGGGCTCAAAAGGAGACAGTGGAAGTCATGGCATACCTGGCTATAAAGGCGAGAAAGGGGAGATGGGACTGTCCGGGCCTGCGGGTATTGATGgacaaaaaggagaaaaaggagATTCAATGTTATCAAGTGTTATGGAAGACAACCTTGCTCAAATGATCTCCCAACCTGGCCCCCCTGGCCCACCCGGCCCCCAAGGACCCATGGGTGATCCAGGCATGGACGGActcaagggagagagaggagacactgGAGAGAGGGGCCCCATTGGACTGCGAGGTCTCCAAGGTCCAACTGGGTTGGTTGGTCTTCCGGGTACTAAAGGCGAAAAGggAAAAGGAGGAGAACCAGGACTAGATggCTTCCCTGGACTTCGGGGTGAAAAGGGTGATCGAGGACTAAAAGGCGAGAAGG

Function

GO:

id name namespace
GO:0035239 tube morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011313 False 1023 mRNA 0.59 11 17717626 17749649
TU132302 True 3129 lncRNA 0.39 2 17747475 17751099
TU132306 False 2020 lncRNA 0.46 8 17745649 17751099
TU132307 False 543 TUCP 0.51 8 17729951 17733068

Neighbor

gene id symbol gene type direction distance location
AMCG00011303 NA coding downstream 264858 17434502 ~ 17452768 (-)
AMCG00011304 NA coding downstream 321639 17379726 ~ 17395987 (-)
AMCG00011301 arhgap26,LOC107713172,LOC107661718 coding downstream 374864 17312451 ~ 17342762 (-)
AMCG00011299 kctd16,LOC106603861 coding downstream 514096 17173697 ~ 17203530 (-)
AMCG00011297 kctd16,LOC106603861 coding downstream 558040 17148015 ~ 17159586 (-)
AMCG00011311 NA coding upstream 10811 17761910 ~ 17773165 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding upstream 32941 17784040 ~ 17785842 (-)
AMCG00011314 LOC107743918,LOC107752029,LOC107664328,LOC107568687,LOC107669111 coding upstream 35821 17786920 ~ 17793506 (-)
AMCG00011318 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding upstream 445442 18196541 ~ 18197251 (-)
AMCG00011317 NA coding upstream 520313 18271412 ~ 18272204 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding downstream 150663 17564169 ~ 17566963 (-)
G105752 NA non-coding downstream 155831 17559402 ~ 17561795 (-)
G105701 NA non-coding downstream 405558 17309790 ~ 17312068 (-)
G105607 NA non-coding downstream 822552 16893960 ~ 16895074 (-)
G105553 NA non-coding downstream 992473 16655247 ~ 16725153 (-)
G105774 NA non-coding upstream 3228 17754327 ~ 17755758 (-)
G105782 NA non-coding upstream 46344 17797443 ~ 17800287 (-)
G105786 NA non-coding upstream 55580 17806679 ~ 17806929 (-)
G105787 NA non-coding upstream 246339 17997438 ~ 17997725 (-)
G105795 NA non-coding upstream 281656 18032755 ~ 18033145 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 756557 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 1619447 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 1743754 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 2201951 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 2344447 15370402 ~ 15373179 (-)
G105770 NA other upstream 154 17751253 ~ 17751502 (-)
G105793 NA other upstream 248569 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 429547 18180646 ~ 18191195 (-)
G105890 NA other upstream 1351194 19102293 ~ 19105269 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 1659269 19410368 ~ 19413015 (-)

Expression


Co-expression Network