G106023


Basic Information

Item Value
gene id G106023
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19588175 ~ 19588972 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132642
GCGGGAGAGGAACGTACCCTTTCGCAGTCCTTTTGAATTAAAGCCTaactttttcctgttttaaacAGAGGAATCAAGCTCttgtttttaaggtttttttgtttttcctcttctgtTCCTTGGAAATGCAGAGACTGTTCGTTTTCACTGACTTCTGAGGAGAGATTTCAATCATTTTCGAAGGCTGTTTTTTCTGGGACTTGAGGCATTGAAGCTTACCAAAGCATTCTCtcagaacattttgttttttatttggtgcTTGTTTCCACGACTTTGCGAGAAAGAGAACTGATTTAACAAAGAGGGAATTATATCTTAAAAGGGACTTTCactgctgactgactgacatctCTGACAATATGACTCATAGAAAGTAGTAGTGACAtatgtatactactactaaaaagCAGAAGTATACATATATCTTCATTGATCATTTGGTCTAATGTTTTGAACTTGGAAAGCTGCTGCAGCAGGATTCTCTTTATCTTTTTAGAAATAAGAAGCTTTTACTGCTTTATCTCTGGCTGCCCCTGTCctttcatttgaataaataaacaaagtccCGGCTCCTCTTTCATGGGCTCAAGGGGCTAAACAGATTACAACAATCATCCCTGCAGATTTGAGGCATCTACCAGAGTTCTACAAAGAGAGCTAATTGGAAACTGTTACTCACACAAGGCAGCTGGAAAGCAGTTCAAGACCTGGACAGAAAGCACCCTTGGACAATGTTTTAGCCCCTCAAAAAAGGGACTGTTGACAAAGTAGACATTGAAGGTaagtctgtttctctgt

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132642 True 798 lncRNA 0.39 1 19588175 19588972

Neighbor

gene id symbol gene type direction distance location
AMCG00011350 LOC105888595 coding downstream 17847 19550227 ~ 19570328 (-)
AMCG00011348 NA coding downstream 48535 19517431 ~ 19539640 (-)
AMCG00011349 NA coding downstream 74855 19499360 ~ 19513320 (-)
AMCG00011345 NA coding downstream 144024 19438223 ~ 19444151 (-)
AMCG00011335 rbm22,LOC107685490 coding downstream 266136 19313827 ~ 19322039 (-)
AMCG00011355 NA coding upstream 132182 19721154 ~ 19726365 (-)
AMCG00011357 camk2a,LOC106563741,LOC106602935 coding upstream 141520 19730492 ~ 19759043 (-)
AMCG00011354 arsi,LOC106604849 coding upstream 228495 19817467 ~ 19824152 (-)
AMCG00011362 NA coding upstream 320970 19909942 ~ 19912905 (-)
AMCG00011366 diaph1 coding upstream 787970 20376942 ~ 20384649 (-)
G105968 NA non-coding downstream 108091 19396793 ~ 19480084 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding downstream 211267 19376513 ~ 19376908 (-)
G105918 NA non-coding downstream 343692 19233722 ~ 19244483 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 971091 18616849 ~ 18617084 (-)
G105823 NA non-coding downstream 1340405 18175668 ~ 18247770 (-)
G106163 NA non-coding upstream 352057 19941029 ~ 20014274 (-)
G106183 NA non-coding upstream 482510 20071482 ~ 20115868 (-)
G106212 NA non-coding upstream 628279 20217251 ~ 20217476 (-)
G106224 NA non-coding upstream 683091 20272063 ~ 20276305 (-)
G106266 NA non-coding upstream 897299 20486271 ~ 20488188 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 175160 19410368 ~ 19413015 (-)
G105890 NA other downstream 482906 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 1396980 18180646 ~ 18191195 (-)
G105793 NA other downstream 1587730 17999668 ~ 18000445 (-)
G105770 NA other downstream 1836673 17751253 ~ 17751502 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 276642 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 2953677 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 3154458 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 3464341 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 3804132 23393104 ~ 23489642 (-)

Expression


Co-expression Network