AMCG00014101


Basic Information

Item Value
gene id AMCG00014101
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1825855 ~ 1833360 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014101
aaaaaagttttcccaGCCAAAAGCGCCCCTCTCTGCAATGATTGATTGTTATGGCGCCGCTCCAGAGCTGGTTTTTTTAAGTGCGTTTTGGTTGCGCACGAAGTTTCTCTTGGATCAAAGGGTCTGCAGGAAGGGGGCGGGCGGCGCGGCGCATATAAGCCGCCCGGGACAGCGAGCTGAAGGGAccggagacagagagacagagagacactgcGCCTCTTCACTTTTATATCCAAGTTGCTGGTTGACTTTTTATTCAGCTGGAAGAAACGTTTTCTGCAACGTTACTGATTCGTCTTATTGAACAGAAGCGAGTCTGCACAGGTCAGGTCCCCGCTGCACTGCCGCAGGAGCGCACCGGATTGCGGTCTTGCTGCCGTGTGTTCAGCTCTGCGGGAGGATGCGCTCTGTGCTGCCGGCCGCGCTGGCTCTGCTGGGCGCTCTGTGCGTAATCGCGGCGCGCAGCCCCTGGCAGGAGGGCACCGTGGAGCCGCTGCGGCTGGACAAGGGTCCGCCGACAGGGACCGCCAGCCCggaggagcaggagaaggaAGCGGAGAAACGGGTCTACGAGCTGGACGCCTTTGGCGAGCGGTTGATCTTGGACTTAGAGCCCGACCAGACGTTCCTGGCTCCGGCATTCACATTCCAGGTGCTGGGGAGGCCGGGGTCGCCCGTGTCGGAGCAGCGGGGAGACTCTGACCGCGCCGCCCTGGCTCGGTGCTTTTACTCCGGCTCTGTCAACGGAGACCCCGGCTCTGCGGCGGCGCTCAACCTCTGCGGCGGGCTGCACGGCGGCTTCTACCTCGGTGCGGACGAGTACTACATCCAGCCCCGCAACGGCAGCTCGGAGGACCGCCAGCCGCACCTCCTCCGCCACAGGAGCCGGGCGCCGCCGGCCGAGGAGGGAGCCTCCAAGTGCGGGGTGAacgaggaggaggagcgggTCCCGGAGAGCCCGGAGCGGCGGGAGGGACAGCAGGGCGAGGCGGCGGCGCGGCGCACAGCTCCCCTCAGGGCCCGGCGGTTCGCGTCCACCCCGCGCTTCGTGGAGACGCTGCTGGTGGCAGATCGCTCCATGGCGGACTTCCACGGCGCCGGGCTGCGGCCCTACCTGCTCACGGTGATGGCGGTTGCGGCCCGGCTGTACCGGCACCCCACCATCCGCAACCCCATCAGCCTGGCCGTGGTGAAGCTGCTGGTGGTGCAGGACGAGGAAGGGGGCCCCGCCGTGTCCACCAACGCCGCCCTCACCCTGCGCAACTTTTGCCAGTGGCAACGGCAGCACAACCCCACCAGCGACCGTCACCCCGAGCACTACGACACGGCCGTGCTCTTCACCAGACAGGACCTGTGTGGCTCCCACTCCTGCGACACGCTGGGCATGGCGGACGTGGGCACCATGTGTGACCCCGAGAGGAGCTGCTCTGTGATCGAGGACGATGGGCTGCAGGCCGCCTTCACCGTGGCCCACGAGCTGGGCCACGTGTTCAACATGCCTCACGACGATGCCAAGCACTGTGCCGGCGTCAACGGCATCCACTGGAGCTCCCACATGATGGCATCCACACTGTCCAACCTCAACCAGCTGCAGCCCTGGTCTCCCTGCAGTGCCCTCATggtcacctccttcctggacgGCGGTCATGGCCAGTGCCTTCTGGACAAGCCGCAGAAGCCCCAGCCGCTGCCCAAGACCCTGCCAGGCTCAGTGTACGACGCCCACCGGCAGTGCCAGCTGACCTTCGGCCCAGAGTCGCGGCACTGCCCGGACATCAGCACCACCTGCTCCGCCCTGTGGTGCACCATGACAGCCGCCGGGGGGCTGTTGGTCTGCCAGACCAAGAACTTCCCCTGGGCGGACGGCACACCCTGCGGCCCGGAGAGCCACTGCCTCGCCGGCCAGTGTCTGACCAAGAGCCAAGCCGCCCTGCACCAGATCCCTGTGAACGGCGGCTGGGGCGCGTGGGGCCCGTGGGGCGACTGCTCGCGGACCTgcggggggggggtgcagtACTCCTACCGCGACTGCGATAACCCCCAGCCCAAGAACGGCGGCAAGTACTGCGAGGGCAAGAGAATCCAGTACCGCTCCTGCAGCATCCAGACCTGCCCCGACAACAACGGTCTGTCCTTCCGGGAGGAGCAGTGCCTGGCCCACAACGAGCTCTCCTCGCAGGTGTCGTTTGGTCCCGGCCCGGCGGTGGAGTGGGTGCCCAAGTACGCCGGGGTTTCGCCCAAGGACCGCTGCAAGCTGGTGGAAGACGGCACGCCCTGCAGCCCAGACTCCACCTCGGTGTGCGTGCAGGGCCAGTGTGTCAAGGCCGGCTGTGACCGCGTCATCGGCTCCAGCAAGAAGTTCGACAAGTGCGGCGTGTGCGGGGGGGACAGCTCCACCTGCAAGAAGGTCACGGGGTCGCTGGACCGTGCAAGGCCGGGCTATCAGGACGTGGTGACCATCCCTGCCGGCGCCACACACATCGACATCAAGCAGCGGGCGCCGGGCGGCTCCCAGCAAGACAACAGCTACCTGGCGCTGCGCGGGGTAGGGGGTGCCTACCTGCTGAACGGCGAGTACACGCTGACCACGCTGGAGACGGACGTGTCCCTGCGCGGTGCCCTGCTGCGCTACAGCGGCTCCTCCGCCGCCCTGGAGCGCATCCGCAGCTTCGGCCCCCTGCCTGAGCCCCTCACGGTGCAGGTGCTGTCGGTGGGCAGTGCCCCGCGGCCGCGGGTCAAGTACAGCTACTTCGCCCCCCGGCCCGCCCCGGCGCGCCCCGCCGTGTCCTTCAACGCCATCCAGGAGACAGCCGCGGCCGACTGGGTGCTGCGGGAGTGGGGGCCCTGCTCCCGGAGCTGCGGAGGGGGCCAGCGCCTGGTGGAGTGCCTGGACCCCCGCGGCCGCCCCTCCACCGACTGCGCCCCCGAGCTGCAGCCGCCCGGCTCCCGCCGCTGCGCGCCCGCCGCCTGCCCGCAGTGGCTGCTGGGAGACTGGTCGTCCTGCTCCAAGAGCTGCGGCCGCGGCTTCCGCAAGCGCCTGCTGCGGTGCGTGAGCGAGGAGGGCCGGGTGCTGCCCCAGGACAGCTGCCCCCCCGCGGAGAAGCCCCGCCCCCTGCTCGACCTCTGCAACCTGGCCGCCTGCCActagagacagacagggagagagactgagagactgagagatggagagagatggagacccGCAGCGTGGCTCTGCTGCAGCGCTCCTCAGAGAGCATCGCCCCACTGCCCAACGCACCCACGCCGTCTCTGGGCTTCTTCTTGCCAccggtttttatttttgctcctCCTGGACTTTACTGACTCGCATACAGactgttttatataaatcaatacagaaacatttgtatatttagaTCAAATCTCTTTACATTCCGGAAAGAAAAGAATGtttacagtttatattttatttttttatatataaagtgttaAACTACAGAACCGCAGGGAGCGAGAGAGCCATCCTGGGCTGCCATGCGGGACTTGCCAGGCCCAGGTTCTGGGGCTGCGTCCGGCCCGGTGCACTGTGGGAGCTTCAGTTTCAAGAGCAGAGACAgcaaatgaatgcaaatgcaGTGTGGGGGTGCGAGGGCGTGATTGTGTCGGGCCCTGCTCTCCTCTCAGTGCGCTGGGTGCATTGTGTACTCTgcatgagtgtgagtgtgtgagtgtcagtgtgtgtcggCCCTGGCTCTGCTCTGGGCGGTGTCCTGGCTGAGAGAGCACCTGTGCACCTGCCAGTCCTAGAGCGCTCCCAAGCTACCTCAACACCGCCGGCGCTGCAGCCAGGCCCCATCCTCTCAGCCTCTCAGCGGACTGCACAGACTGCTGCTGCCCCCCTGCCTGCTCTGCCCATCTGACGCTGCCCTGGGTTCACCGGGGCGCCCAGCGTGGCTGCAAGGGGTGCTCAGTCTTCAGAGACGCAGCAACACGGTTTAAACAGAATTGGAGTTCTGAGGTTAGGACTGCAGTACCGTGGGATTCTGAAACAgttgccgtgtgtgtgtgcatgcgtgtacGTGTGCCTGTGCCTGTACATGAACAGGTGTTGTTCTGTGCCAAACCCATTGTTCTAAGTGGATGCAGGGGTCCACGGAGCGAGGGCAGGAGAGCCGCTGTCCTGAGGCTCCCAATCCCAGCTGAATCGATGGGTCTTGATAGTTGCTGCTAAATAGTAGTTTGTCACTAAAGTGATCCCCAATTAACATGTAGTCTAAATCTGAGTTCCGATCCACATGCACAGTGTCGGTGTGTCCGCAGGCTGAAGCTCACACTGCAGGGCTGCTTCACAGTCCCCCCACCCCGAACCCTGTCTCTGCCCCCCACTGAGGTCCTCGTATGATTATTCTCTGGGCTTTATTTATGTGCCGGGCTGCGGGGCCGTGCGGTGACCGCTGCACGACAGCCCACAGGCACTGCTGTGTTTATGCCATGTTCATATGattgtttcttgtgtttctattttacattttttatacagactgtctttgcttttcatttggtcACGCATACCTGTTGTGATGGGTCTTTTATAGTCTGTTTGTGCAGTGTTGAGCGTGTGACAGCGTGTGAGAGCGTGTGAGAGCGTGTgagagcatgtgtgtgtctgttcagTACAGGAGGGGAGGGGATTCTTGGAGCCCCGCACTCCCCCCCGGTGAGGGAGCCCCCACTGCACACCAGCCTCTACTTCATAAGTACAGGTGTCCTGCCTTCTGAGAAGGactgttattatatattgtgtttgtacataCAATccagacattatttatttttgtacagccCTCTTAatataatctttattataaattatcgcttttattattgtcattgttattactgttattatattattataattgttatcaAAAAACAGAGGGTGGTTGAGTGTTCAGAGTATTTAtgcagtattatatatatatatatatatatgtatatatatatatatttgatggaTGCTAGGTTTTGcaaactaaaaattaaaaagtgaccGTTGAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08617 ADAMTS1; a disintegrin and metalloproteinase with thrombospondin motifs 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014101 True 5019 mRNA 0.61 10 1825855 1833360

Neighbor

gene id symbol gene type direction distance location
AMCG00014100 NA coding upstream 12557 1799682 ~ 1813298 (+)
AMCG00014095 NA coding upstream 261281 1545327 ~ 1564574 (+)
AMCG00014096 NA coding upstream 280630 1541410 ~ 1545225 (+)
AMCG00014089 NA coding upstream 392247 1412350 ~ 1433608 (+)
AMCG00014094 NA coding upstream 433917 1390961 ~ 1391938 (+)
AMCG00014102 app coding downstream 25318 1858678 ~ 1869442 (+)
AMCG00014103 NA coding downstream 39389 1872749 ~ 1878960 (+)
AMCG00014106 NA coding downstream 87979 1921339 ~ 1925062 (+)
AMCG00014112 NA coding downstream 175242 2008602 ~ 2022266 (+)
AMCG00014113 NA coding downstream 191238 2024598 ~ 2028511 (+)
G67792 NA non-coding upstream 4097 1820573 ~ 1821758 (+)
G67699 NA non-coding upstream 549639 1275991 ~ 1276216 (+)
G67698 NA non-coding upstream 575541 1250099 ~ 1250314 (+)
G67690 NA non-coding upstream 803042 981839 ~ 1022813 (+)
G67685 NA non-coding upstream 1021109 804537 ~ 804746 (+)
G67789 NA non-coding downstream 6805 1840165 ~ 1842445 (+)
G67882 NA non-coding downstream 243943 2077303 ~ 2077602 (+)
G67899 NA non-coding downstream 315089 2148449 ~ 2148654 (+)
G67907 NA non-coding downstream 500131 2333491 ~ 2333944 (+)
G67908 NA non-coding downstream 516769 2350129 ~ 2373305 (+)
AMCG00014099 NA other upstream 328251 1479919 ~ 1497604 (+)
AMCG00014061 NA other upstream 1578853 136864 ~ 247002 (+)
G67577 NA other upstream 1718733 58449 ~ 107122 (+)
AMCG00014104 cyyr1,LOC107751099 other downstream 2072 1835432 ~ 1838125 (+)
G67801 NA other downstream 45731 1879091 ~ 1881041 (+)
AMCG00014111 NA other downstream 66860 1900220 ~ 1902687 (+)
G67896 NA other downstream 293512 2126872 ~ 2130145 (+)
AMCG00014146 NA other downstream 873480 2706840 ~ 2710329 (+)

Expression


Co-expression Network