AMCG00014108


Basic Information

Item Value
gene id AMCG00014108
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1879203 ~ 1885432 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014108
ATGGGTTACAGACGTGTCCTGATGAGGAAACGGGAGAGGATGAGGAGGAAGGAAGGGGGGAGATGGGGGAgtcCGCGGGCCGGCGCTGTCACTGTGAGCACGGACACCCCCATCGTGGAGGTCCGGGAGGACGGAGGTGAGGGGCAGagggctgggggaggggggcagggagacgACGCAGTGCTGAACTGCCACTTCAAGACGGAGATTGACCACTCCCCACGGATCGAGTGGAAGAAGATGAGCAGGGGGGACGTGTCCTTCGTGTTCTACGAGGGGGCCTTCAGTgATTCTTTCCGGGGCCGTGCGGAGATCTCCGGCGCCACAGTGACCCTGCGCAGGGTGACGCAGCAGGACGCCGGCATGTTCCGCTGTGAGGTCAGCTCCGGCTTGGACCAGGTCTCACTGGGGGAGACCAACATCACGCTCAGGGTGCTGGACTCCGGGCAGTACCACTGTGAGGCCAACAACAGGGTGGGGGAGCCCAAGAGCTGCATCGGCAAATACATGCAGATTGATGACCTGAACGTGGCTGGCATCGTGGCcgcggtggtggtggtgctcCTGGTGGTGTCGCTGTGTGGGCTGGGCATCTGCTACGCCCACCGCCAGGGCTACTttcacaaggGGCATCGTGGAAGGACTTTAAACACACGCAGTCCTTCGTGCTGTGAGGAACCGGGCGCCCTGCCTGGCTCTGCTGGGGCCCATTGGACTGGACATCCTGCCCACACCACTGACCATCCAGACTAGACACCCTGCCCGCACCAACTGGAACCAACTGGACAGGACAGTGCAATCAGAACACTGCCACGCTAGACTGGACAATAGGATCAAACCACAGCTCCACTGGAGTGGACTTGACCCAATAATTAAACCCCTCGCtaggctgggctgggctgtgggAGCTGCGCAGTCTGCTTTGCACCAGGACcccctgtgtgtgagtgtgtcagtgtggacaggggtgcatgtgcgtgtgcgtgtaagtatgtatgtatgtaataggGCTCATCATGTACGTGTGCTCGCTACAGGTGATGTAACCCCTCTGTAGATCAGTAAAGCCTCCCGTGTCGCGAAACCTGGGTCCAGTTGCATAAACTtagactaagtctttgtcttacTGGTCAGTAacgcaaagcattctgggaattttaagaccGTAAAACTAAACATGGCGCTTCTCTAAAACTGACAATCCCAGTCATTTCACAGTAACAGAAAATCTGTGCTTGTTATATAATGTAGAGAGGTATATACTCAAACACAAGGCGTGGGATAAAATAATGAAGGGAAACGTGTGCGTGGCCTGTAAAACACGGGCAGAAACGACAGAATCTCCTCGTACTGGAGGAGGACCGCCCTCAAAACGTACAGGCCACAGGATTGGGTATTGAAGTCTGTGGGGCGGAGTCTCATGTTTTGGGGGATCGCTGGTGGGCGGGACGGGGGCTGGTGTGAACCAATGGGAGGCTCTGCCCCTCAGCATCAGTGACTGTCGCTGTAGTCTCAGGCCAGCAGATTCAATGGAAAGTTGGACACATTTTAAGTCagcctgggggtgaggaggcGGACTTTTCAGGCCAAGTCTTAGTCTTAATTTTACacaactgactaacttgcattagactggtctgtcaaattaagaccagtctgatatagttttatgcaaccggccccatGTCTTTTGGCGCAGCGGGCTCATCCGTGCGGTGTGGAATCCTGAGCTCCAAACCGCACcggatatgtgtgtgtgagagtgtcagtgtagacagggctgtgtgtgagagtgtcagtggagacagggctgtgtgtgagtgtcagtggaGACAGGGCTGTGCCAGTGTGAGAGTGTCAGTGGAGACAGGGTTGTCCTGTCCACCACTCCTCCCTCGAGGGACAAGCAGGGATCAGGCAGCGCTGAAACCCGCTCCGCTCTGAGTGCAGTaccacaaacacagaaaggGGTGGACTTGTCGACAGGCTTCTCATAAGACGCGTGTGTTTCTAACAGCGCCTCACTGCGTTCCTTGTGTGGCCGAGGTGCGGCCACTGTGCTCGCACTGCGAACTGGAATCATACGGATCGCTGGCTTGTTCGTTTGTTTTTGCACAGAAGCTGTATTTTGTGGCATCAgtattaaaacatgcttttcttaCCCACACTGGTGCCTTATTGGGGTCTCCGTGCTCAGCTGCACATGGCGCTGGCCtcgcacacacaacacacacagacagacgcacacaacaCACGATGACTCCCTCCTCCGGAAGAGCAGCCACACGCTTTGCAGAACTTGCAGcttttgaagcctttgattgAATGAACAGTCGCAGCACCCTCTGTCATTTTCCCTTTAAAGCTGCACTCATTTCTTCTAAGAGTTAAGTCTCACTGCAGGGCTGCCCCTCTTCTTCTGAG
>TU84715
GCAGTTTAACCCTGTCTCCAGGGCAGACTCCGGGCAGTACCACTGTGAGGCCAACAACAGGGTGGGGGAGCCCAAGAGCTGCATCGGCAAATACATGCAGATTGATGACCTGAACGTGGCTGGCATCGTGGCcgcggtggtggtggtgctcCTGGTGGTGTCGCTGTGTGGGCTGGGCATCTGCTACGCCCACCGCCAGGGCTACTttcacaaggGGCATCGTGGAAGCGCCGGGGCCCCCTACAGCAGCGCCCCACAGGAAGACTTTAAACACACGCAGTCCTTCGTGCTGTGAGGAACCGGGCGCCCTGCCTGGCTCTGCTGGGGCCCATTGGACTGGACATCCTGCCCACACCACTGACCATCCAGACTAGACACCCTGCCCGCACCAACTGGAACCAACTGGACAGGACAGTGCAATCAGAACACTGCCACGCTAGACTGGACAATAGGATCAAACCACAGCTCCACTGGAGTGGACTTGACCCAATAATTAAACCCCTCGCtaggctgggctgggctgtgggAGCTGCGCAGTCTGCTTTGCACCAGGACcccctgtgtgtgagtgtgtcagtgtggacaggggtgcatgtgcgtgtgcgtgtaagtatgtatgtatgtaataggGCTCATCATGTACGTGTGCTCGCTACAGGTGATGTAACCCCTCTGTAGATCAGTAAAGCCTCCCGTGTCGCGAAACCTGGGTCCAGTTGCATAAACTtagactaagtctttgtcttacTGGTCAGTAacgcaaagcattctgggaattttaagaccGTAAAACTAAACATGGCGCTTCTCTAAAACTGACAATCCCAGTCATTTCACAGTAACAGAAAATCTGTGCTTGTTATATAATGTAGAGAGGTATATACTCAAACACAAGGCGTGGGATAAAATAATGAAGGGAAACGTGTGCGTGGCCTGTAAAACACGGGCAGAAACGACAGAATCTCCTCGTACTGGAGGAGGACCGCCCTCAAAACGTACAGGCCACAGGATTGGGTATTGAAGTCTGTGGGGCGGAGTCTCATGTTTTGGGGGATCGCTGGTGGGCGGGACGGGGGCTGGTGTGAACCAATGGGAGGCTCTGCCCCTCAGCATCAGTGACTGTCGCTGTAGTCTCAGGCCAGCAGATTCAATGGAAAGTTGGACACATTTTAAGTCagcctgggggtgaggaggcGGACTTTTCAGGCCAAGTCTTAGTCTTAATTTTACacaactgactaacttgcattagactggtctgtcaaattaagaccagtctgatatagttttatgcaaccggccccatGTCTTTTGGCGCAGCGGGCTCATCCGTGCGGTGTGGAATCCTGAGCTCCAAACCGCACcggatatgtgtgtgtgagagtgtcagtgtagacagggctgtgtgtgagagtgtcagtggagacagggctgtgtgtgagtgtcagtggaGACAGGGCTGTGCCAGTGTGAGAGTGTCAGTGGAGACAGGGTTGTCCTGTCCACCACTCCTCCCTCGAGGGACAAGCAGGGATCAGGCAGCGCTGAAACCCGCTCCGCTCTGAGTGCAGTaccacaaacacagaaaggGGTGGACTTGTCGACAGGCTTCTCATAAGACGCGTGTGTTTCTAACAGCGCCTCACTGCGTTCCTTGTGTGGCCGAGGTGCGGCCACTGTGCTCGCACTGCGAACTGGAATCATACGGATCGCTGGCTTGTTCGTTTGTTTTTGCACAGAAGCTGTATTTTGTGGCATCAgtattaaaacatgcttttcttaCCCACACTGGTGCCTTATTGGGGTCTCCGTGCTCAGCTGCACATGGCGCTGGCCtcgcacacacaacacacacagacagacgcacacaacaCACGATGACTCCCTCCTCCGGAAGAGCAGCCACACGCTTTGCAGAACTTGCAGcttttgaagcctttgattgAATGAACAGTCGCAGCACCCTCTGTCATTTTCCCTTTAAAGCTGCACTCATTTCTTCTAAGAGTTAAGTCTCACTGCAGGGCTGCCCCTCTTCTTCTGAGCtcgt
>TU84716
GCAGTTTAACCCTGTCTCCAGGGCAGACTCCGGGCAGTACCACTGTGAGGCCAACAACAGGGTGGGGGAGCCCAAGAGCTGCATCGGCAAATACATGCAGATTGATGACCTGAACGTGGCTGGCATCGTGGCcgcggtggtggtggtgctcCTGGTGGTGTCGCTGTGTGGGCTGGGCATCTGCTACGCCCACCGCCAGGGCTACTttcacaaggGGCATCGTGGAAGGTCATTCTGGATCCCACAGTGCCATGGCGCCGCTCACATCAGCAGCCAGAATCTGCACAGGACTGACGACacCGCCGGGGCCCCCTACAGCAGCGCCCCACAGGAAGACTTTAAACACACGCAGTCCTTCGTGCTGTGAGGAACCGGGCGCCCTGCCTGGCTCTGCTGGGGCCCATTGGACTGGACATCCTGCCCACACCACTGACCATCCAGACTAGACACCCTGCCCGCACCAACTGGAACCAACTGGACAGGACAGTGCAATCAGAACACTGCCACGCTAGACTGGACAATAGGATCAAACCACAGCTCCACTGGAGTGGACTTGACCCAATAATTAAACCCCTCGCtaggctgggctgggctgtgggAGCTGCGCAGTCTGCTTTGCACCAGGACcccctgtgtgtgagtgtgtcagtgtggacaggggtgcatgtgcgtgtgcgtgtaagtatgtatgtatgtaataggGCTCATCATGTACGTGTGCTCGCTACAGGTGATGTAACCCCTCTGTAGATCAGTAAAGCCTCCCGTGTCGCGAAACCTGGGTCCAGTTGCATAAACTtagactaagtctttgtcttacTGGTCAGTAacgcaaagcattctgggaattttaagaccGTAAAACTAAACATGGCGCTTCTCTAAAACTGACAATCCCAGTCATTTCACAGTAACAGAAAATCTGTGCTTGTTATATAATGTAGAGAGGTATATACTCAAACACAAGGCGTGGGATAAAATAATGAAGGGAAACGTGTGCGTGGCCTGTAAAACACGGGCAGAAACGACAGAATCTCCTCGTACTGGAGGAGGACCGCCCTCAAAACGTACAGGCCACAGGATTGGGTATTGAAGTCTGTGGGGCGGAGTCTCATGTTTTGGGGGATCGCTGGTGGGCGGGACGGGGGCTGGTGTGAACCAATGGGAGGCTCTGCCCCTCAGCATCAGTGACTGTCGCTGTAGTCTCAGGCCAGCAGATTCAATGGAAAGTTGGACACATTTTAAGTCagcctgggggtgaggaggcGGACTTTTCAGGCCAAGTCTTAGTCTTAATTTTACacaactgactaacttgcattagactggtctgtcaaattaagaccagtctgatatagttttatgcaaccggccccatGTCTTTTGGCGCAGCGGGCTCATCCGTGCGGTGTGGAATCCTGAGCTCCAAACCGCACcggatatgtgtgtgtgagagtgtcagtgtagacagggctgtgtgtgagagtgtcagtggagacagggctgtgtgtgagtgtcagtggaGACAGGGCTGTGCCAGTGTGAGAGTGTCAGTGGAGACAGGGTTGTCCTGTCCACCACTCCTCCCTCGAGGGACAAGCAGGGATCAGGCAGCGCTGAAACCCGCTCCGCTCTGAGTGCAGTaccacaaacacagaaaggGGTGGACTTGTCGACAGGCTTCTCATAAGACGCGTGTGTTTCTAACAGCGCCTCACTGCGTTCCTTGTGTGGCCGAGGTGCGGCCACTGTGCTCGCACTGCGAACTGGAATCATACGGATCGCTGGCTTGTTCGTTTGTTTTTGCACAGAAGCTGTATTTTGTGGCATCAgtattaaaacatgcttttcttaCCCACACTGGTGCCTTATTGGGGTCTCCGTGCTCAGCTGCACATGGCGCTGGCCtcgcacacacaacacacacagacagacgcacacaacaCACGATGACTCCCTCCTCCGGAAGAGCAGCCACACGCTTTGCAGAACTTGCAGcttttgaagcctttgattgAATGAACAGTCGCAGCACCCTCTGTCATTTTCCCTTTAAAGCTGCACTCATTTCTTCTAAGAGTTAAGTCTCACTGCAGGGCTGCCCCTCTTCTTCTGAGCtcgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014108 True 2424 mRNA 0.55 8 1879208 1885432
TU84715 False 2050 lncRNA 0.54 5 1879203 1882950
TU84716 False 2122 TUCP 0.54 6 1879203 1882950

Neighbor

gene id symbol gene type direction distance location
AMCG00014097 NA coding downstream 340998 1537057 ~ 1538205 (-)
AMCG00014090 NA coding downstream 424586 1453775 ~ 1454617 (-)
AMCG00014091 NA coding downstream 466356 1391356 ~ 1412847 (-)
AMCG00014082 NA coding downstream 598806 1267242 ~ 1280397 (-)
AMCG00014080 NA coding downstream 646602 1231624 ~ 1232601 (-)
AMCG00014109 NA coding upstream 10233 1895665 ~ 1898909 (-)
AMCG00014107 NA coding upstream 17984 1903416 ~ 1903733 (-)
AMCG00014110 NA coding upstream 20718 1906150 ~ 1915590 (-)
AMCG00014115 son,LOC565999,LOC107698912,LOC107555269,LOC107709257,LOC107698212 coding upstream 144158 2029590 ~ 2031527 (-)
AMCG00014117 NA coding upstream 146809 2032241 ~ 2032429 (-)
G67818 NA non-coding downstream 57444 1820612 ~ 1821759 (-)
G67691 NA non-coding downstream 781224 1097656 ~ 1097979 (-)
G67686 NA non-coding downstream 1007576 871053 ~ 871627 (-)
G67658 NA non-coding downstream 1377418 500007 ~ 501785 (-)
G67646 NA non-coding downstream 1492262 386733 ~ 386941 (-)
G67849 NA non-coding upstream 56595 1942027 ~ 1942420 (-)
G67881 NA non-coding upstream 171417 2056849 ~ 2059491 (-)
G67911 NA non-coding upstream 464693 2350125 ~ 2373329 (-)
G67953 NA non-coding upstream 722837 2608269 ~ 2608479 (-)
G68057 NA non-coding upstream 811376 2696808 ~ 2701159 (-)
AMCG00014105 gabpa,LOC106586689 other downstream 5781 1869850 ~ 1873422 (-)
G67813 NA other downstream 9755 1801662 ~ 1869448 (-)
G67824 LOC103352860 other downstream 15510 1859542 ~ 1863693 (-)
G67825 NA other downstream 36758 1840165 ~ 1842445 (-)
AMCG00014098 NA other downstream 309274 1564778 ~ 1569929 (-)
G67835 NA other upstream 6631 1892063 ~ 1892553 (-)
G67832 NA other upstream 15208 1900640 ~ 1902615 (-)
G67843 NA other upstream 31295 1916727 ~ 1918182 (-)
AMCG00014119 NA other upstream 200509 2085941 ~ 2124953 (-)
AMCG00014134 NA other upstream 646522 2531954 ~ 2542697 (-)

Expression


Co-expression Network