AMCG00014141


Basic Information

Item Value
gene id AMCG00014141
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2574463 ~ 2576803 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014141
TGGAGACGTACTGGATCTGTGGCTAAAAATGGCGGCGACCTTGTGGGCGAGAACGTGAAAAATGAGCACCGTGGAAACTTGCAAGCAGAAAGCCCAGTTTCTTTTCTTCGGATAGTGTTTCCCGTGGAGGGAAGAGGCGACAGACGGCGTGGATTTGAAGCAGTGGAGGCAGGGCTTTGCACGGAGATGATCGCGCTGCTGAAGTCCGCCTCTGTGGGGCTCTTTGCGCGGATGGGGGGCGCAGGGCTCTTCCAGAACCCACTGAAGGTCCTCTCGGCTGGACTGAAGACCTTTGACCCTCCCCCTGACTTCAGTGATGTGGTTCTGCCAGAGCGCACAAAACTGAAGTTCGTCAACAAGATTCCCAACTTGAAGAGGGCCAAGAAGGAGATGAAGAAGCTGAGGGACATCCAAGGCCCGGCCCAGGCAGCCAACACCTTCACCCGCGGCCAGTATGGCATCGTGgcGCTGGGCGGGGGATACCTGCACTGGGGCCACTTTGAGATGATGAGACTGACCATCAACAGGCGCATAGACCCGCGAACCACCTTCGCCTGCTGGCGGGTCAACGCGCCCTACAAGCCGATCACGCGCAAGGGGCTGGGCCAGCGCATGGGCGGGGGCAAGGGCGCCATCGACCACTACGTCACACCAGTGCGCTGCGGGCGGCTGGTGCTGGAGCTGGGCGGCCACTGCGAGCTGGATGAGGTCAAGCCCgtggTGAGCAGGGAGAGCCTGGCAGCCATGCAGCAGGAGGAGAGGGACCGGGAGCTCAGCAACCAGAACCCCTGGACCTTCCAGAGAGTCGCCATGAGCAACATGCTGGGCATCCGAAAAGTGCTGAGCCCCTTCGACCTGCGGCACGGCGGCAAGTACACGGGCAAGTTCCGGCTGCCCGAGAGAGTGTGAGCCGGCGGCGTGGCCAGAGTCCCCACTCCTGCTCTGGGTGCACCACACTCCCCCTGGCTGGACCTGTGAGTCTGAACTGAGTACACACTGTGCAGCAGGAGGAGATCAGAGAAGAGGGCTTGCTGGGTGGATGGCGCACTGTAGCTCACTGTTGTTCCAATGGTCGATGTACAGCTGCCCGGACTGGATCTTCTGTCCAACCTGCAGTGGTGTTCTGAGCTTCTGGTTTGAAGATGGGTCCCTACATCCCTTCAGCAGAGGAACCCCTGTggtcagatttgtatttaaaaaatgagtaaaaaacaataaaatctttCAAGAAGATACATACAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02878 RP-L16, MRPL16, rplP; large subunit ribosomal protein L16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014141 True 1242 mRNA 0.59 5 2574463 2576803

Neighbor

gene id symbol gene type direction distance location
AMCG00014131 NA coding downstream 4072 2562533 ~ 2570391 (-)
AMCG00014132 NA coding downstream 26279 2542918 ~ 2548184 (-)
AMCG00014138 NA coding downstream 235276 2325102 ~ 2339187 (-)
AMCG00014136 NA coding downstream 295480 2268517 ~ 2278983 (-)
AMCG00014133 NA coding downstream 397159 2176819 ~ 2177304 (-)
AMCG00014143 NA coding upstream 38452 2615255 ~ 2615530 (-)
AMCG00014145 NA coding upstream 54855 2631658 ~ 2635316 (-)
AMCG00014142 NA coding upstream 91178 2667981 ~ 2675410 (-)
AMCG00014150 NA coding upstream 154728 2731531 ~ 2734872 (-)
AMCG00014151 NA coding upstream 168542 2745345 ~ 2751995 (-)
G67911 NA non-coding downstream 201134 2350125 ~ 2373329 (-)
G67881 NA non-coding downstream 514972 2056849 ~ 2059491 (-)
G67849 NA non-coding downstream 632043 1942027 ~ 1942420 (-)
G67818 NA non-coding downstream 752704 1820612 ~ 1821759 (-)
G67691 NA non-coding downstream 1476484 1097656 ~ 1097979 (-)
G67953 NA non-coding upstream 31466 2608269 ~ 2608479 (-)
G68057 NA non-coding upstream 120005 2696808 ~ 2701159 (-)
G68061 NA non-coding upstream 131014 2707817 ~ 2710329 (-)
G68070 NA non-coding upstream 181682 2758485 ~ 2758840 (-)
G68073 NA non-coding upstream 188387 2765190 ~ 2766174 (-)
AMCG00014134 NA other downstream 31766 2531954 ~ 2542697 (-)
AMCG00014119 NA other downstream 449510 2085941 ~ 2124953 (-)
G67843 NA other downstream 656281 1916727 ~ 1918182 (-)
G67832 NA other downstream 671848 1900640 ~ 1902615 (-)
G67835 NA other downstream 681910 1892063 ~ 1892553 (-)
AMCG00014144 NA other upstream 64256 2641059 ~ 2653247 (-)
G68088 NA other upstream 248759 2825562 ~ 2829144 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other upstream 808954 3385757 ~ 3394754 (-)
AMCG00014228 NA other upstream 3082269 5659072 ~ 5678499 (-)
AMCG00014241 NA other upstream 3482686 6059489 ~ 6108358 (-)

Expression


Co-expression Network