AMCG00014146


Basic Information

Item Value
gene id AMCG00014146
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2706840 ~ 2710329 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014146
ccagaaaaGAGAGATGAGGTGAATGATCTTGATCTGACCTATTTTGAGCGCGGTCTCATTGTTGGCGGCCACAAATTGGGGAAGTCTCTGTTGGAGATCGTGGAGATCACTGGTCTGCCTAAACGAGCGGTGAAGAAGTTCCTGAGGGACTGGAAGAAAGGAGCCATCGATgcCGACACCGGCATTTACAAGGACGCCATCGCCGCGGGGAGAGAGAGCGCCGACAGTGGCAGCGATGACTGACGTCCTGAGGGGGCTCTCGGACAGCGGCTCCGACGGCCGCCCCCCACAGGGGTTTGCTGTACCCAAGGACTGAGTAGCACTAATAAAGATTTTTTCAGAGA
>TU84895
CCTCtccaaaacaatgcaaatgtacGGCAGaaaaGAGGTGATCGACCCTGAGATGACCGATTTTGAGCGCGGTCTCATCGTTGGTTACCAAGAAGGGGGGAAGTCTCTGGCGGAGATCGTGGAGATCACTGGTCTGCCCAAACGAGCGGTGAAGAAGTTCCTGAGGGACTGGAAGAAAGGAGCCATCGATgcCGACACCGGCATTTACAAGGACGCCATCGCCGCGGGGAGAGAGAGCGCCGACAGTGGCAGCGATGACTGACGTCCTGAGGGGGCTCTCGGACAGCGGCTCCGACGGCCGCCCCCCACAGGGGTTTGCTGTACCCAAGGACTGAGTAGCACTAATAAAGATTTTTTCAGAGA
>TU84896
CCTCtccaaaacaatgcaaatAGATGAGGTGAATGATCTTGATCTGACCTATTTTGAGCGCGGTCTCATTGTTGGCGGCCACAAATTGGGGAAGTCTCTGTTGGAGATCGTGGAGATCACTGGTCTGCCTAAACGAGCGGTGAAGAAGTTCCTGAGGGACTGGAAGAAAGGAGCCATCGATgcCGACACCGGCATTTACAAGGACGCCATCGCCGCGGGGAGAGAGAGCGCCGACAGTGGCAGCGATGACTGACGTCCTGAGGGGGCTCTCGGACAGCGGCTCCGACGGCCGCCCCCCACAGGGGTTTGCTGTACCCAAGGACTGAGTAGCACTAATAAAGATTTTTTCAGAGA
>TU84897
CCTCtccaaaacaatgcaaataaaaGAGGTGATCGACCCTGAGATGACCGATTTTGAGCGCGGTCTCATCGTTGGTTACCAAGAAGGGGGGAAGTCTCTGGCGGAGATCGTGGAGATCACTGGTCTGCCCAAACGAGCGGTGAAGAAGTTCCTGAGGGACTGGAAGAAAGGAGCCATCGATgcCGACACCGGCATTTACAAGGACGCCATCGCCGCGGGGAGAGAGAGCGCCGACAGTGGCAGCGATGACTGACGTCCTGAGGGGGCTCTCGGACAGCGGCTCCGACGGCCGCCCCCCACAGGGGTTTGCTGTACCCAAGGACTGAGTAGCACTAATAAAGATTTTTTCAGAGA
>TU84898
CCCAttccctctctttccttctccctcCTCATCTCTCACTCCAGACACAGATGTAACATGTTTTTGACTCATGGAGATGAGGTGAATGATCTTGATCTGACCTATTTTGAGCGCGGTCTCATTGTTGGCGGCCACAAATTGGGGAAGTCTCTGTTGGAGATCGTGGAGATCACTGGTCTGCCTAAACGAGCGGTGAAGAAGTTCCTGAGGGACTGGAAGAAAGGAGCCATCGATgcCGACACCGGCATTTACAAGGACGCCATCGCCGCGGGGAGAGAGAGCGCCGACAGTGGCAGCGATGACTGACGTCCTGAGGGGGCTCTCGGACAGCGGCTCCGACGGCCGCCCCCCACAGGGGTTTGCTGTACCCAAGGACTGAGTAGCACTAATAAAGATTTTTTCAGAGA

Function

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014146 False 344 mRNA 0.56 3 2707815 2710329
TU84895 False 363 TUCP 0.57 4 2706840 2710329
TU84896 False 354 TUCP 0.55 3 2706840 2710329
TU84897 False 354 TUCP 0.56 4 2706840 2710329
TU84898 True 407 TUCP 0.54 3 2709024 2710329

Neighbor

gene id symbol gene type direction distance location
AMCG00014126 NA coding upstream 145663 2558599 ~ 2561177 (+)
AMCG00014130 NA coding upstream 150272 2549354 ~ 2556568 (+)
AMCG00014128 NA coding upstream 164442 2539703 ~ 2542398 (+)
AMCG00014137 NA coding upstream 209693 2486625 ~ 2497147 (+)
AMCG00014135 NA coding upstream 252284 2451049 ~ 2454556 (+)
AMCG00014147 NA coding downstream 65049 2775378 ~ 2778596 (+)
AMCG00014148 NA coding downstream 78266 2788595 ~ 2790836 (+)
AMCG00014149 NA coding downstream 109213 2819542 ~ 2821456 (+)
AMCG00014161 NA coding downstream 199100 2909429 ~ 2915164 (+)
AMCG00014152 NA coding downstream 213071 2923400 ~ 2928310 (+)
G67908 NA non-coding upstream 333535 2350129 ~ 2373305 (+)
G67907 NA non-coding upstream 372896 2333491 ~ 2333944 (+)
G67899 NA non-coding upstream 558186 2148449 ~ 2148654 (+)
G67882 NA non-coding upstream 629238 2077303 ~ 2077602 (+)
G67789 NA non-coding upstream 864395 1840165 ~ 1842445 (+)
G67983 NA non-coding downstream 35915 2746244 ~ 2755484 (+)
G67988 NA non-coding downstream 57173 2767502 ~ 2768837 (+)
G67994 NA non-coding downstream 72010 2782339 ~ 2802044 (+)
G67997 NA non-coding downstream 82413 2792742 ~ 2797809 (+)
G68046 NA non-coding downstream 265885 2976214 ~ 2976510 (+)
G67896 NA other upstream 576695 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 804153 1900220 ~ 1902687 (+)
G67801 NA other upstream 825799 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 868715 1835432 ~ 1838125 (+)
AMCG00014099 NA other upstream 1209236 1479919 ~ 1497604 (+)
AMCG00014196 NA other downstream 1417147 4127476 ~ 4131718 (+)
G68475 NA other downstream 1938871 4649200 ~ 4651964 (+)
G68830 NA other downstream 4635866 7346195 ~ 7349467 (+)
G68848 NA other downstream 4703311 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 4754174 7464503 ~ 7482560 (+)

Expression


Co-expression Network