AMCG00014164


Basic Information

Item Value
gene id AMCG00014164
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3149895 ~ 3166217 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014164
GCCTTGGCTAATGCCTGCGTTTTCCTCTCCTCAGCTGTCTCTAACCTGGACGTGGAGAGCAAGCTGACCGTGCACTACCAGGCCCCCTGGCACCAGCAGCGCAATGTGTTCCACCCTTCCACCCGGCCCCCCTGTGTCGAGGAGCTCCACCGACACGCCAAGCAGAACCTGCGGGCCCTGCACAGAGACCAACAGCAGAGACAGCGGGCGAACAGCAGGGAGCGCCGGGTGACAATCTCGATTTCCGTGGCACCTCCTATGCCCACCTTCCCCTCTCCGCGCACCCTCAGACGGCGGGAACAGCGAAGCAGGCACCTCCGAACGTTTGGCAGAACCCGCTCATCCTCCCCCACTCAGTGTTGCCACTTGACCCCCTGGAGCAGAAAGGCTATTCCCCTGACTGACCCCGACATCGATGTAGTCGCATTAGGTCACAGGCCGAAGTGTCCAGTGCCTAATATCCCGTCAACACTGGACAAGCAGACCAACTGGTCAAAAGCGCTACCTCTCCCAACGCCAGAGGAGAAAATGAGAACAGAGTCCCAAGTGATCTCGTCATGCATTATACCCATTAATGTCACTGGTAAATTTGCTGATTTTCTTGTCAGTACTACAGAGGAGACGGAAACTGAGAAGGAGAAAAACCATCTCCGGCATTCCCAGACGAGTGCAGCAAGAAATAGAGAACGCAACGTGATCGTGCACACCAATCCAGACTTCTCCCTGTGCCATGAAGAGTTGAATTCCCTCAATGGCCGGTCAACCACTAAGGACTCCGGGTGCCAGACAGATGACATCCTGATCACCGCGCCCTCTCGAAGGCGGATCCGAGCCCAGAGAGGTCAAGGCATCCCGAGCTCCCTCTCACACTCCACCGGCAACATCACATCCCTGCCGGACAACTCAGACACCATGTTTACAGCCTCGATGGGCAGCCGCCTCCGCTCGCGCAGCCTTCCCCGGGAGGGGGGACGAGTCGTGGACGAGGATCACGACAGCGACGAGGAGCTGTCTCCGTACGAGGCCGAGGAGTTCCTGCCTGGACCGGAGAGGGCCTTAAAGGACGAGGAAGAGAGCACAGATGACCAGGCCATGCCCGAACACCAGCTGGTCAGTCTCAAGTGCAAACAACACGTAGGAAGCCCAGACCACACCTGGAGTGAAAGAGGAAGATCCAGGCTTCCCCGGAAAGTGGACATGGGAAGCTGTGAGATTTCTTCCAGCTCAGATACATTCAGCAGCCCCATTCACTCCATCTCGACGACAGGAGTGCTTGGGAGCCAGATAGACCACAAGGAGGACCACCAGTCCTCCAGCGGCAACTGGAGTGGGAGCAGCTCCACGTGCCCCTCGCAGACGTCAGAGACCATCCCCCCTGCTGCTTCGCCTCCCCTGACAGGATCTTCACACTGTGATTCGGAGCTGTCGCTGAACACCGCTCCTCACGCCAACGATGACCCCACCGGCTTCATCATCGACCCGTACCCGACTGAAAAAGTCCGAGGCCACAGGGCGAGTTCCTTTACCTCCACGGTAACCGACCTGCTGGACGACCCCGGCATGAGCACCGTGAGCGACGGCGAGTGGAACTACCTGCATCATCAGCACGACAAATCCTGCTGTCAGGATTTCAGCCCCCAGCGCTCGAGGGAGGACGAGGGTGGCCTCGAATGCCCCAGCTTCACAAGCATGGCAACGTACGAAAGCTTTATGGACAAGCCGCCATCTGAGAAGGATTCGAGCTCCCACTACTCCGTGGACACAGAAGGCTACTATACCTCCATGCACTTTGACTGTGGTCTTAAAGCTAGCAAAAGCTATATTTATAACTATGCAGCCATGGGCCCTGATTGTGGCCAGAGCCTAAATGTTGCACCTAGCATGGGCGGATACCCTCAGCCAGACTACCAGGGTCACAGGACAACAGGGAGACAaagtctttcttttaaaaaaccAAAGGTGAAGCCAGCCCCACCAAAACGCAGTTCGTCattgaagaaaacaagcagTGGTGCAAATGTTGCTGACAAGAAAGAACCAAAGATAAACAGCGGGCAGCACCTGCCTTTGTCTTCCAGGGAAATGAAGCTGCAGCTGGACTTGGCCGGCTCCCCAGGCCAGTTGGACAACCCGACTCTAGGCGACGAGCCAGCCGAGCCCTGGGAGGTTCAGGCTGCTGGCGAGATGACAGACTCCACTTTGTTTGGCTCCACAGATAACCACTCCTTTAAGGATGAAGGTGCTGTACAGTCCGACTATGCAGATCTCTGGCTCCTCAATGACTTGAAGTCCAACGATCCCTATCGGTCGTTGTCCAACTCCAGCACTGCTACGGGTACAACTGTCATTGAGTGCATCAAGTCGCCAGAGAGCTCCGAATCCCAGACGTCCCAGTCGGGATCAAGGGCCACCACACCGTCTCTTCCTTCTGTGGAAAACGAGTTCAAGCTTGCCTCTCCCGAAAAGCTAGCCGGGTTGGCATCACCATCCAGCGGGTACTCCAGTCAATCAGAGACGCCAACATCTTCCTTCCCTTCGGCTTTCTTCCCCGGACCCCTGTCCCCGACAAGTGGAAAGAGGAAGCCAAAAGTCCCAGAGAGGAaatcttctctctcttccctgcagcagcagcagcatcccTCCAGAGATGGAAGCACCTCATCCAAGAGAGACCTTGAGCTACCGATTATACCTCCAACCCATCTTGACCTAAGTGCTCTTCACAACGTTCTCAACAAGCCTTCAGCCCACAGAAACCAGATGCACATTCTCCATCAGAACAAGCAAAAGGCAGCAGCGGCCGCGGCAGCCATCGCTGCGGCCAACTCGGACACTTCGGGCTCTAGTCTTCTGGCCATCACTCCCACCGTGCTTCGTTCGGTCCAGCTGCGGTCCGTTAGCAAGCCCAGCGACCCAAGCCAGGACAGACAGAATACCGAGGCTTTCCCCCGGCTGAAATGCCCCACTGTGACAATTGTCAGTCCACCCGCCAGTAACATGTCCTCAGAATCAAAGAGACCCACGTCCCACAAGTCCTATGATCCCCATTCTCAGGAGTCCCCTCAGACACCGTTTACTCCAGGCGACGGACCCTACGCAAGGGATGTAGCATATCTTGACAACGCTAAATGCAAGCAAGAGAAAAAAgcctcgcccccccccccaggggCTACGGCAGTAATTCAAGCTCCTTCCGACTCATCGTGCACAGATGACAATCTCTTATTGAAGCCGCCATTTCAGACCGAGGCTCATCTCCCAGGAAATGAGCTTCGGAAAGACCCTGAGTGCAGAGGGATGTCTGGGCCCGCGGCCTGCCCAGAAGAGGAGGAACAAGAGAGGAGCGCATCGCGGATCCCGATCCCTAGCAGCAGCCTAGCGGCGGTGCACAGTCAGCTGACGAGACCCGAGCCAGCCGCCGAGACCCCACTGGGCGGTCTGACGAAAGCAGGTTCCCCTCCTGCGTCCAACGATATAGCAAAGAAGTTTGACTTTGGTTCGTGCAACAGTTTTGACAAAGTGCCTGTAATTATTACTTATCAATCAGAAACATCGCAAGCTTACACAATCAGTGATACCAGTAGCAGAGAGCAGGAATATGACGACACATCAGGTGTTCCTACCAGAAGTGCCTCACAGGACAGCAGGGAAGAGGGGACAACGCCAGACACTGAAGATTACTACAGCAAAGAGTCTACGCCTAGTGACAACTCACTTTCGCCACTGAGTGATGAGACGAAGGCTGAAGATGACAGTGTTTTCCTATCTCCTAACAAACTACGCACTACTGAAGATCTTTTCGCCATGATTCACAGATCCAAAAGAAAAGTGCTGGGACGAAAGGACTCGGGGGAGCTGGGCGTGAGGAACAGGTTGAGCACCGCGCCCGTGAGCTCCCCGGCCACATCTCCGGGCACACCGGCCACCTCCCCGGGCACCCCAGGCGCCTCCCAGCGCACGCCAGGACCCATCTACAGGAGTGCCAAAAAGTCCAGCACCTCCAACGAGGAGTtcaagctgctgctgctgaagaaGGGCAGCCGCACGGACTCCAGCTACAGGATGTCCGCGACGGAGATCCTCAAGAGTCCCGTGGCGCCCAAGTCTCCCGGCGACCTCGGCGCGGAGGGCCCCCGCACCCCGGAGGAGCTGGCCTCTCCCCTCCAGCTGCCCCTGTCGGCGTCCGAGCAGCTCTCCAGCCCCTCTCCCAGAGCCAACACGGAAGGGTTCTCCTCGAAGACCTTCGGGATGTCCGCCTCCTCCCGGCAGGGCCGCTCCCGGATCCCCCCCGCCGCCAACAGCAGCCGCTACAGCATGCGTAGCCGCCTCTATACAGCGCCCATGCAGGCCATCtcggagggggagacggagaaCTCGGACGGTAGCCCCCACGACGACCGGTCCTCTCAAAGCTCCTCGTAGATAGAGTATctagatttccttttttttttttttttttataaaacagaaaa

Function

GO: NA

KEGG:

id description
K24144 NHS; Nance-Horan syndrome protein and NHS-like proteins

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014164 True 4472 mRNA 0.57 8 3149895 3166217

Neighbor

gene id symbol gene type direction distance location
AMCG00014162 nhs,LOC103378685 coding upstream 105150 3044338 ~ 3044745 (+)
AMCG00014163 NA coding upstream 119192 2996445 ~ 3030703 (+)
AMCG00014152 NA coding upstream 221585 2923400 ~ 2928310 (+)
AMCG00014161 NA coding upstream 234731 2909429 ~ 2915164 (+)
AMCG00014149 NA coding upstream 328439 2819542 ~ 2821456 (+)
AMCG00014166 NA coding downstream 5617 3171834 ~ 3176055 (+)
AMCG00014165 NA coding downstream 53986 3220203 ~ 3221921 (+)
AMCG00014171 NA coding downstream 173135 3339352 ~ 3370944 (+)
AMCG00014170 NA coding downstream 211475 3377692 ~ 3378273 (+)
AMCG00014174 LOC108425737 coding downstream 225390 3391607 ~ 3397123 (+)
G68046 NA non-coding upstream 173385 2976214 ~ 2976510 (+)
G67994 NA non-coding upstream 347851 2782339 ~ 2802044 (+)
G67997 NA non-coding upstream 352086 2792742 ~ 2797809 (+)
G67988 NA non-coding upstream 381058 2767502 ~ 2768837 (+)
G67983 NA non-coding upstream 394411 2746244 ~ 2755484 (+)
G68151 NA non-coding downstream 58357 3224574 ~ 3226499 (+)
G68153 NA non-coding downstream 60642 3226859 ~ 3228126 (+)
G68166 NA non-coding downstream 208620 3374837 ~ 3375148 (+)
G68167 NA non-coding downstream 209368 3375585 ~ 3375789 (+)
G68189 NA non-coding downstream 244761 3410978 ~ 3483649 (+)
AMCG00014146 NA other upstream 439566 2706840 ~ 2710329 (+)
G67896 NA other upstream 1019750 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 1247208 1900220 ~ 1902687 (+)
G67801 NA other upstream 1268854 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 1311770 1835432 ~ 1838125 (+)
AMCG00014196 NA other downstream 961259 4127476 ~ 4131718 (+)
G68475 NA other downstream 1482983 4649200 ~ 4651964 (+)
G68830 NA other downstream 4179978 7346195 ~ 7349467 (+)
G68848 NA other downstream 4247423 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 4298286 7464503 ~ 7482560 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021948 nhsa coding NC_007134.7 CM002907.2 41200854 ~ 41229194 (+)
grasscarp (Ctenopharyngodon idella) CI01000306_05740500_05745336 NHSB, NHS coding CI01000306 null 5740321 ~ 5745473 (+)
striped catfish (Pangasianodon hypophthalmus) G366070 nhs,nhsb,LOC108425741 non-coding NC_047619.1 CM018565.1 14875762 ~ 14878710 (-)