AMCG00014173 (rbbp7,LOC105893332,LOC108438657)


Basic Information

Item Value
gene id AMCG00014173
gene name rbbp7,LOC105893332,LOC108438657
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3462068 ~ 3471988 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014173
CAGCCGGGGTCTTGTGTCAGGCAGCGCGCAGGCGCACTGTCTCTCTCCGGCGGCTCTCGGCGCGGATTGCAAGAGAAACACGGGAAGCAGAAACAGATGGTCGGATTGAATCTGTGACTTCGCACATAAAGAGAGCGGGCGGAGTTGTTTTCCGTCGGCGCCGTGTTTTGACTGTCGAAACCGAAGCGTACTCGTCTCCACCGAGGACCGAGCAATGGCGGACAAAGAAGTGTATGACGATGCTGTGGAGGAGCGCGTCATCAACGAGGAGTACAAGATCTGGAAGAAGAACACGCCCTTCCTGTACGACCTGGTGATGACGCACGCCCTGGAGTGGCCGAGTCTCACCGTGCAGTGGCTCCCGGATGTGAACAGGCCAGAAGGGAAGGACTACGCCATCCACAGGCTGGTGCTGGGAACGCACACTTCGGACGAGCAGAACCACCTGGTCATCGCCAGCGTCCAGATCCCCAACGACGACGCGCAGTTCGACACGTCCCACTACGACAGCGAGAAAGGAGaattTGGAGGGTTTGGGTCGGTGAGCGGGAAGATCGAGATCGAAATCAAGATCAACCACGAGGGGGAGGTGAACCGGGCCAGGTACATGCCGCAGAACCCCTGTGTCATCGCCACTAAGACGCCCACTTCGGACGTGCTGGTGTTCGACTACACCAAACACCCCTCCAAACCAGGCGAGTACCCCAGCGGAGAGTGCAGCCCCGACCTGCGTCTGAGAGGACACCAGAAAGAGGGTTATGGTCTGTCCTGGAACCCCAACCTGAGCGGAAACCTGCTGAGTGCCTCCGACGACCACACGATCTGTCTGTGGGACATCAGCGCCGGGCCGAAGGAGGGAAAGATCGTAGACGCCAAGACCATCTTCACCGGCCACACCGCGGTGGTGGAGGACGTGTCGTGGCACCTGCTCCACGAGTCTCTGTTCGGCTCCGTGGCTGATGACCAGAAGCTGATGATCTGGGACACGCGGTCAAACAACACGTCCAAGCCCAGTCACTCGGTGGACGCCCACACTGCGGAGGTCAACTGCCTGTCCTTCAACCCCTACAGCGAGTTCATCCTGGCCACCGGATCTGCTGATAAGACTGTGGCCCTGTGGGATCTGAGGAACCTGAAACTGAAACTCCACTCCTTCGAGTCGCACAAGGACGAGATCTTCCAGGTGCAATGGTCCCCTCATAACGAAACCATCCTGGCTTCAAGTGGCACAGACAGAAGACTGAATGTCTGGGATTTGAGTAAAATTGGAGAGGAGCAGTCGGCTGAGGACGCAGAGGATGGGCCTCCTGAGCTCCTGTTCATTCACGGAGGACACACGGCGAAGATCTCCGACTTCTCCTGGAACCCCAACGAGCCGTGGGTGATTTGCTCCGTCTCTGAGGACAACATCATGCAAGTGTGGCAGATGGCCGAGAACATCTACAACGACGAAGAGCCCGACACCCCGGCCTCCGAGCTGGAAGGTCAGGGATCATAACGGCTGCCGCGCCCCTGGCCGGGTGGCAGCCAGCGCCAGGGAGAGCCGCAGCTCTGGCCTCTCCACCCGGCCCTCCGTGTAGATACACCGGCCTCCTCTCCATGCTCCAGCGTTAGGGTGTAGCTCATCAAAGCGGTCCCCATTATATTTTTCTATCGGAAGCGGCAGTTTGACACTGGCGTGGCCCGTGCCTCCAGGCAGCGGAGTCGGTACGGACGtggtttttttgttgttgtgaggaaaaaataaataaaaaaatacttttgtgaaTTTCAAATAGCGATGGAAAGCATTGAATCACACATCATGGCAgtaatgctttttcattttccaaagaTGTATTACCACACCAGCGCATTTTGCCATATTACCCTTATTTAAGAGCGCGTTTGACGCCGGGCCCGGCTGCCACGACTCCAGCCCTGTCCACAGGGAGAGAGGTGGCAGTGAACTCTTCTGGCATGGTAACCTTAAATTCCCTCTTtactttgtacttttttttttgttccattttgtgcaaaatatggtataaaatgcaataaactttttgtattaacttttaaaacgtcaaagctttgattttctTCCACTGGGAAATACGCCGAAGGAGTTCAGTAATATGGAGTGGTAAGTGTTCAGAGATTATAGTTTTATAGAAAGTAAGTTTTAATACTCTTAGGGTACCTTTTACTGTCAGCATTTTTAGATTGTTTCTATAAAACACTGGTCATAGAAATGAGTTCATAGCTGTAACTTGTATCATTTGAAATCCTAAAAGTGCATTCatgaaagtaaaagaaaataatcagtAAACACCAGTTTAATTGGCTCTGTACAGAATAGAAGTTGACACGTTCACAatcttggaaaaaaaactacaaaatgttttattgaaaagcaAGACAGGACTATCAGAACATCTTACAATCTCTCTTGATGGGACTTGGGCTTTAActttagaaaataaagctttttttcttcttgtgaaAAGCATAAAGTTGGTTTCTGCCTCATTTTCTTTCACAGTTAGTCTCATATACAACCTGTAGAGGTAGATTTCTTGCATAACCTGAGAGTCAAACTGTGGCGTTGCCAAAACGGAGGAAAGTAAAGACACTGAAAACAGTCGAAGCATTACAGCGCGGATGTCAGTACCGTGGATAAACGCACAGCCGCCTCTGTACACACAAAAGAGCTTTCTGATTAAGTACATCAcagcataacatttaaaaacaatttcacaCGTAAAGCAGGACAGGTTCTacatagaaatacaaaaataaattgcaacaACATGATGGCAAGACTTTTTTCTTGTACAGGTTGGATAATAACTTGTATTTATGAGTTACAACAGAAGTATAGAGGCCACAGTGAAGCTCAGTGAGCACTCGGCTCTTCTGCAGCCGTTTAAGGAGTCCTTTACATTcacattattcattaaaatcaaaatattgcTTCCAGAACCACGGTGATAATATTGTtggctgtctgtgtgttatAAAGCCACCTCTGAAATTGGTTTCATGTCACTCAGACCAtcctttgttatttttatgcattgataaactttttttttttatgtctcaCTCATCcttacatatttaatacatgttactcaataaacatgtataatttaCTCCAATTCCAcgtgtttctttcattttctacaAGCATGGGAAATTCAGGTTTAAAGGTcctgttcaaaataaaacatcacattcTTTAGACTCTGATGGAactctgaaaataatttaatctttcTAGATAAATATAGGCAGTAAAGTTTGTTAAACTggcaaaaacacttttttttgtttgtttttaagagtgAAATCAGAAGTGTTTTCATAACACACTTGACTGTCTGGATgttataatacacacatttcagtaGCTGAATGCCAGGCTGAGGATCAAGCTGTAGGAAGAAGTCCCTGTGTAatgctctggaaaaaatatcatatatatatataagaaatgcTGGTGCTCGGAGCAAGAGGAATTATTTGACAGTATGTCTTGCATGAATTCAGCTTGGTTCTTACATACCTTCTATTGCACACAACACACTTTAAATCTATTCTGCAgtgtgaaatacacacacattcaagtAACACTGAGACCATGATGCATGATACATGAAGCAATTAAAGTAATAAGTAGTAGGTGAGAGTTTCAAGggcttctttctttcttcttctcacTTAACACTGCTTACTTTGGCCGTTAAACACTTCTAAAATGACTTGTGTTGCCTACACTTGTTTGCTACATTACTGGTAAAAGCTCACTGAAGATTGATTCCCGTTTCATGCCGtgcataaataataaaggaatCTAAAGTCATCTTTCTGTACAGACACCAGAGTGGATGCTGTAGTCTAAAAGCATGACTTGGAATAAAGATCTTTAGAATCTGCatgaaaatagatttatttgtgttactcTACCGTTCTCTCTGTTCTCAAATGCATCCTTTTCACGACAAACACAGTGGCGTCTAAATGCTGGCAATTTAACCGCCCAAAAATATAATGCCACGTTAGtcccatttcaaaaacaatgaaGATTCAGAATGAAAAGGCTGTGGCAGCTTTTGCATGAAGATTACCCTGTtcaaaaatgtatctaaattGAGAAAGTGGGGTGCAAGGATCTTGGAAGAATTCCTGTTGAACCCCACATCGGAGGAGTCAGCAGAACGCAGCTGTGATCCCAGCCCTGAGGAGATTGGTGTGGTTATAAACCCTGTATTACCAGTTCGGTTTTTTGACTGGTTATGAGGATGTATGACTACCGACCAAGTCATTTTGTGCCTCTTCTGTACGGATATTGTCCAGAATATGACTATTGTCTTTTGAAAAGCAAGGAAAGATACATTCATCAGTCCAGTGTTCCCTGTCATTGGAATctctattgtaaagtgttttttaagcACAATAATGGTGCggtaatgcaaatatatatatagaataatgTGCATTATTGATAAAGGTAAAAAGGTAAATCAGATTCTGTACTTCCAGAAACTGAACTTTTATCGATCAGTCATACAATGTAGGTGCTGTACATAAGCAGCCACTAAATCCGGCTCAAATGTACTTGAATGTCAGGAAGttcctaaaaataaaagcacctgCCTGAGGCCCATGAACAGTTTAAAGTCTGTGTGACTGTCTTTTCAGAGGACAGCAGCTTCTCCACACTGTTAGCACAACCGATCGGGTCAAGAAGCCACATTTTGGAAAGAACATTAATGGGGAATGTTTTAAAGTGACTCTGAACTATATTCTGTTAAATTTTAAAGGGAATGTCGTTGAGAAAATGTTTCATGGCGCTGTCGGAGGCTTCAGAGGGTTTTAGTCAATATCGGAATGAGACCATAGTCATCCCAGCTGTCTTGCAGGGATCCAATTTAATCAATTGTGCTGCTTGAACAACGACGAACTGGATCAAGAAAGTGTGGGGCGAAATACAACCTCTCCATTTCCTGTGCCGAGGAAGGAAATGTTTCCGTTGACAAGACAGTGGTGCGACAAGTCAACGAAGCTCGTAACAGTCCAGTAAAGATCCTGAAAGTCGACGTCTTCGCAGCTTTTGCCTGGGAGAGGTTTCCGTACGAAGCTTTGCAAACCAAGCTGCTAATCTCATAAAACTCATCCACTTGTGCGAAAGAGGAACGAATCTTAAGAAATATAGCCCTATGCATCAGTCCGTTTCTTAAAAAATAGTTTAGATTTCTCTGAAATGTTACATCTGTACACTTGTTTCAGCCAGGATGGCCATATCGGAAGGGAAAGTTAATAAAGAATGAGGCAGACGTGCGCAAAACATTGTGagaaacaaactatatataaagTAGTCGACTCCAGAGCTGCCGAGTCACAGTTTGAACCACATTAAATTTCCTAAGAAAATACAGGTGTGGTAGAAAATGAAGTAAGAAATCCTCACCACAAAGCCAATAATTACCAATAAGAGCAAAttataattactactactattattaattttattattacacaaaaatatatacctcgagagagagagaga

Function

symbol description
rbbp7 Enables histone binding activity. Involved in cellular heat acclimation and negative regulation of cell growth. Located in cytosol and nucleoplasm. Part of ESC/E(Z) complex and NuRD complex.

NR:

description
PREDICTED: histone-binding protein RBBP7 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006260 DNA replication biological_process
GO:0035098 ESC/E(Z) complex cellular_component

KEGG:

id description
K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014173 True 5554 mRNA 0.44 12 3462068 3471988

Neighbor

gene id symbol gene type direction distance location
AMCG00014176 NA coding upstream 9578 3434157 ~ 3452490 (+)
AMCG00014175 NA coding upstream 52961 3398291 ~ 3409107 (+)
AMCG00014174 LOC108425737 coding upstream 64945 3391607 ~ 3397123 (+)
AMCG00014170 NA coding upstream 83795 3377692 ~ 3378273 (+)
AMCG00014171 NA coding upstream 91124 3339352 ~ 3370944 (+)
AMCG00014184 NA coding downstream 17491 3489479 ~ 3511658 (+)
AMCG00014182 NA coding downstream 55029 3527017 ~ 3554734 (+)
AMCG00014183 NA coding downstream 86930 3558918 ~ 3559709 (+)
AMCG00014188 NA coding downstream 110631 3582619 ~ 3582945 (+)
AMCG00014187 NA coding downstream 123107 3595095 ~ 3615081 (+)
G68167 NA non-coding upstream 86279 3375585 ~ 3375789 (+)
G68166 NA non-coding upstream 86920 3374837 ~ 3375148 (+)
G68153 NA non-coding upstream 233942 3226859 ~ 3228126 (+)
G68151 NA non-coding upstream 235569 3224574 ~ 3226499 (+)
G68046 NA non-coding upstream 485558 2976214 ~ 2976510 (+)
G68292 NA non-coding downstream 482378 3954366 ~ 3955265 (+)
G68317 NA non-coding downstream 611775 4083763 ~ 4083964 (+)
G68374 NA non-coding downstream 821338 4293326 ~ 4293526 (+)
G68376 trappc2 non-coding downstream 822829 4294817 ~ 4295819 (+)
G68422 NA non-coding downstream 1028876 4500864 ~ 4550002 (+)
AMCG00014146 NA other upstream 751739 2706840 ~ 2710329 (+)
G67896 NA other upstream 1331923 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 1559381 1900220 ~ 1902687 (+)
G67801 NA other upstream 1581027 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 1623943 1835432 ~ 1838125 (+)
AMCG00014196 NA other downstream 655488 4127476 ~ 4131718 (+)
G68475 NA other downstream 1177212 4649200 ~ 4651964 (+)
G68830 NA other downstream 3874207 7346195 ~ 7349467 (+)
G68848 NA other downstream 3941652 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 3992515 7464503 ~ 7482560 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014886 rbbp4 coding NC_007130.7 CM002903.2 30999833 ~ 31007417 (-)