AMCG00014174 (LOC108425737)


Basic Information

Item Value
gene id AMCG00014174
gene name LOC108425737
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3391607 ~ 3397123 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014174
ATGCCACCGGAGCTGCCCAGACTCCTCTGCAATCTGTTGGCTTTGGACACAGAGCGAAAACAACAGCTGAGAAAGAGGCTGTGTCACCCGTCGGTGGGCAAACAGACACCCAACTCTACCCACGGGAAGGATATTCTGCAGATCCTGCAAGATGTCTTCAGCCTGCTTCCAGTGGCGACAGTAATTGACAACAAAGTGCTTATCGTCCATGGAGGGATTTCGGACTTGACCGACCTGGATTTCCTGGGCTCCATCGAGAGGCACAAGTTCAAGTCCGCACTCAGGCCCCCGAAGCGCAGCCTCGACCTCGGCGAGGAGAGGGGCCACAGACAGGTGGTGGGCTCGTATACGGACCGCGGCGGCAGTGGCTCCTCCAAACGGCGCCAAGCCAAGCTACCCAAGCAGCGCAGCAgctcgtcctcgtcctcctcgGCGTCCTCCCGTCACTCCTCCTCTTCGTGGGACAAGGACCCTGCCCCGCGCAGCGTGGCCAGCCCCAGCGCCAGCCTGGAGGTGCCCTTCCTCGACTCCGACGTCTCCATCGCGCCCAGAGAGCCGCCCCGGGAGGAGGTCGAGTGGAAGCAGATCGTTGACCTGCTCTGGAGCGACCCCAAGAGCCACAGCGGCTGCACGCCCAACACCTTCAGAGGGGGCGGCTGCTACTTCGGGCCGGACGTCACCCAGAAGCTGCTGAAAAAACACCAGCTGAAGATGCTGATCCGCTCCCACGAGTGCAAGCAGGAGGGATACGAGCTGTGCCACGATGGCAAGGTGATCACCATTTTCTCCGCCTCCAACTACTATGAGGTGGGCAGTAACCGCGGGGCGTACGTCAAGCTGGGCCCAGACCTGATCCCTCGCTTCTTCCAGTACCAAGTCAGCAAGTGCACCCGGAAGATGACGCTGCAGCAACGGGTTAGCGTGGCCGAAGGTTCGGCCCTGAAGTCTCTGCAGGAGAAGCTGTATGCCCACCGGTCCGAGCTGATCGCCGCCTTCCAGCAGTACGACCAGAGCAgcacagGCCGGATCTCCATCAGCGAGTGGGCGATGGCGGTGGAGTCCGTGCTGCGCCTGGACCTGCCCTGGCGGACCCTGCGCTCCCGGCTGGTCCGGCTGGCCCCCGACGGGGATGTCGAATACCTGTCCTGCTTCGAGGACCTGCACATGGGACAGCCCATTTCAGAGGTCACGCCAAACTTGGTTGAAACATTGTATCGGTATCGCACCGACCTGGagataatatttaatataatcgACAAAGATCATTCAGGGCTGATTTCGGTGGAGGAGTTCCGTCAGACCTGGAAGCTGTTCAGCTCCCACCTCAGCATCGACATCGATGACGCGGCCATCGACAACCTGGCGCGGAGCATCGACTTCAATAAGGACGGCAGCATCGACTTCAACGAGTTCCTGGAAGCCTTCCGCGTCGTGCACCGGCTGGAGGCCAAGCAGCCGCGCTGA

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase with EF-hands 1-like isoform X4

GO: NA

KEGG:

id description
K13807 PPEF, PPP7C; serine/threonine-protein phosphatase with EF-hands

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014174 True 1464 mRNA 0.61 9 3391607 3397123

Neighbor

gene id symbol gene type direction distance location
AMCG00014170 NA coding upstream 13334 3377692 ~ 3378273 (+)
AMCG00014171 NA coding upstream 20663 3339352 ~ 3370944 (+)
AMCG00014165 NA coding upstream 169686 3220203 ~ 3221921 (+)
AMCG00014166 NA coding upstream 215552 3171834 ~ 3176055 (+)
AMCG00014164 NA coding upstream 225390 3149895 ~ 3166217 (+)
AMCG00014175 NA coding downstream 1168 3398291 ~ 3409107 (+)
AMCG00014176 NA coding downstream 37034 3434157 ~ 3452490 (+)
AMCG00014173 rbbp7,LOC105893332,LOC108438657 coding downstream 64945 3462068 ~ 3471988 (+)
AMCG00014184 NA coding downstream 92356 3489479 ~ 3511658 (+)
AMCG00014182 NA coding downstream 129894 3527017 ~ 3554734 (+)
G68167 NA non-coding upstream 15818 3375585 ~ 3375789 (+)
G68166 NA non-coding upstream 16459 3374837 ~ 3375148 (+)
G68153 NA non-coding upstream 163481 3226859 ~ 3228126 (+)
G68151 NA non-coding upstream 165108 3224574 ~ 3226499 (+)
G68046 NA non-coding upstream 415097 2976214 ~ 2976510 (+)
G68189 NA non-coding downstream 13855 3410978 ~ 3483649 (+)
G68292 NA non-coding downstream 557243 3954366 ~ 3955265 (+)
G68317 NA non-coding downstream 686640 4083763 ~ 4083964 (+)
G68374 NA non-coding downstream 896203 4293326 ~ 4293526 (+)
G68376 trappc2 non-coding downstream 897694 4294817 ~ 4295819 (+)
AMCG00014146 NA other upstream 681278 2706840 ~ 2710329 (+)
G67896 NA other upstream 1261462 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 1488920 1900220 ~ 1902687 (+)
G67801 NA other upstream 1510566 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 1553482 1835432 ~ 1838125 (+)
AMCG00014196 NA other downstream 730353 4127476 ~ 4131718 (+)
G68475 NA other downstream 1252077 4649200 ~ 4651964 (+)
G68830 NA other downstream 3949072 7346195 ~ 7349467 (+)
G68848 NA other downstream 4016517 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 4067380 7464503 ~ 7482560 (+)

Expression


Co-expression Network