AMCG00014176


Basic Information

Item Value
gene id AMCG00014176
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3434157 ~ 3452490 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014176
ATGACAAGCCTACATCCGAGTCTGGGAGCCAATCAGCGCCGGGCTGGGTCGTACATGATTCATCCCGGAGAGGAGACGGAGGGGGCCGAGCATATTGAACTGGCCGCGCTGTGTGTCCGCTGCTGCGCATGGTTTCTGTCCGGGGAGCCTGACTACAGATTATGCCGGCAGGGGAAACTCAGACTGCAGAAATGGTATGTACCCTTGTCCgacaaggagaagaagaagatcACGCGGGAGCTGGTGCAGACCGTGCTGGCCCGTAAGCCCAAGATGTGCAGCTTCCTGGAGTGGAGAGACCTCAAGATTGTTTACAAAAGGCTGACCCACAACCAGCAGCTAAACACGGCCTGCTGGGACACTGACCGGTCTGTAGCCTCCCGCTGCCAGACGGGCTCTGAAAGCGGCCAGCCAGCGAAGACAATTACCAGGAAAAATGgcttgtgcttgtttttgaaCGCAGCTGCATATTTCCTCCGGTATGCTAGCCTGTATTTCTGCTGTGCCATTGAAGACCAGGACAATGAGCTCATCACACTGGAGATCATCCACCGATACGTAGAGCTGCTGGATAAGTACTTTGGCAGTGTGTGTGAGCTGGACATCATCTTCAACTTCGAGAAGGCTTATTTCATCCTGGACGAGTTCCTGCTGGGAGGGGAGGCCCAGGAGACCTCCAAGAAGAACGTGCTGAAGGCCATCGAACAGGCAGACCTTCTCCAAGAGGAAGCTGAGACCCCGCGCAGCGTCCTCGAAGAGATTGGACTGACATAG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K12394 AP1S1_2; AP-1 complex subunit sigma 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014176 True 774 mRNA 0.55 6 3434157 3452490

Neighbor

gene id symbol gene type direction distance location
AMCG00014175 NA coding upstream 25050 3398291 ~ 3409107 (+)
AMCG00014174 LOC108425737 coding upstream 37034 3391607 ~ 3397123 (+)
AMCG00014170 NA coding upstream 55884 3377692 ~ 3378273 (+)
AMCG00014171 NA coding upstream 63213 3339352 ~ 3370944 (+)
AMCG00014165 NA coding upstream 212236 3220203 ~ 3221921 (+)
AMCG00014173 rbbp7,LOC105893332,LOC108438657 coding downstream 9578 3462068 ~ 3471988 (+)
AMCG00014184 NA coding downstream 36989 3489479 ~ 3511658 (+)
AMCG00014182 NA coding downstream 74527 3527017 ~ 3554734 (+)
AMCG00014183 NA coding downstream 106428 3558918 ~ 3559709 (+)
AMCG00014188 NA coding downstream 130129 3582619 ~ 3582945 (+)
G68167 NA non-coding upstream 58368 3375585 ~ 3375789 (+)
G68166 NA non-coding upstream 59009 3374837 ~ 3375148 (+)
G68153 NA non-coding upstream 206031 3226859 ~ 3228126 (+)
G68151 NA non-coding upstream 207658 3224574 ~ 3226499 (+)
G68046 NA non-coding upstream 457647 2976214 ~ 2976510 (+)
G68292 NA non-coding downstream 501876 3954366 ~ 3955265 (+)
G68317 NA non-coding downstream 631273 4083763 ~ 4083964 (+)
G68374 NA non-coding downstream 840836 4293326 ~ 4293526 (+)
G68376 trappc2 non-coding downstream 842327 4294817 ~ 4295819 (+)
G68422 NA non-coding downstream 1048374 4500864 ~ 4550002 (+)
AMCG00014146 NA other upstream 723828 2706840 ~ 2710329 (+)
G67896 NA other upstream 1304012 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 1531470 1900220 ~ 1902687 (+)
G67801 NA other upstream 1553116 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 1596032 1835432 ~ 1838125 (+)
AMCG00014196 NA other downstream 674986 4127476 ~ 4131718 (+)
G68475 NA other downstream 1196710 4649200 ~ 4651964 (+)
G68830 NA other downstream 3893705 7346195 ~ 7349467 (+)
G68848 NA other downstream 3961150 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 4012013 7464503 ~ 7482560 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022692 NA coding NC_007134.7 CM002907.2 46208304 ~ 46217134 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_02413193_02426439 SERPINE1 coding CI01000026 null 2413096 ~ 2427014 (-)