AMCG00014192 (msl3,LOC106574410)


Basic Information

Item Value
gene id AMCG00014192
gene name msl3,LOC106574410
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3933258 ~ 3950277 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014192
GCTCAGAACGCGTTTCCTCTCCCGTCCGCCGCATCCAAACTCTGTCTCCAGCTTTCGGGAGCGGCGTGGCTTTGATTAAGCGCGGCGGGTAACGGGTTAAGGAGCGGGGGTCCGGattcctcctctcctgctcgCCATGATGAACAAATGAACTCTCGGGGAATGAAATTTAAATTTCACAAAGGAGAGAAAGTGCTCTGCTTCGAACCGGACCCCACGAAGGCCAAAGTGCTGTACGATGCGAAGGTCGTCGATGTTGTTGTTGGAAAAGATGAGCGGGGTAGAAAGGTCCCAGAGTATCTGATTCATTTTAATGGTTGGAACAGAAGCTGGGATAGATGGGCAGCAGAGGATCATGTTCTTCGTGACACCGATGAAAACCGCAGATTACAGCGTAAACTGGCACGGAAAGCTGTGGCTCGCATGAGGAGAAAGGGATGGAAGAAGCGACGCTGTCGTCTGCCAGGTGTTGACTCAGTCCTAAAAACCCTTCCTGAAGACGAAAAAGAGGAAAGCGATGAGATCTCTTTGAGCTCGTCTTCTGAGGACAGTGACGAGGACGATTCGGAGGACGTGGAGTCGTTAAAAAGTGAGGACACGGATATTGAGGAGACTGCAGACATGAAAGAGGAACAGGAAGCGCCTCCTAAGAAGGAAAATGAGGACAAAACCATCAACATAGAAATCCCTGAGGTGTTGAAGAAGAAGCTGGAGGATGACTGCTACTACATTAACAAGAGGAAGAAGTTGGTCAAGCTACCATGCCAAATGAACATTGTGAACATCCTGGAGTCCTACGTCAAGCACTTCGCTATAAATGCAGCATTCTCCGCGAACGAGCGGTGTCGGCACCACCAGGCGACGCCTCAGACGAACCTCAACCCTCACTACGTCCCACCAGAGAAGAACGAGGAGCTTTGTAAAGAAATGGTGGACGGCTTGCGGATCACCTTTGATTTCACGCTCCCGATGATCCTGCTGTACCAGTACGAACACGCTCAGTTCAAGAAGGTCAGCTCCTCCAAGTTCTTCATGCCAATCAAGGACAACTCGGTCACTTCCAGCAGGACCCTGGAGGAGTGCTCCCCCAGCCCCCCGGCTCTGAACCCCTCCACCCCACAGTCCACGGACAGCCAGCCGCCGGTCAGTGAGGCGTCCACCCCCAAGCGCAAGAAGGCCGAGCCCGAGGCGCTGCAGTCCCTGCGCCGGTCCACGCGCCACACCTCCGGGGGTGACCGGCTGTCCGAAAGCAGCGCCTCCCCGCAGCCCAAGCGCCGCCACGCCGACACGCCCGCGCCACTTCCCAAGTTCTTCCTCAACATCGAGAAGAaaACTCCTGTTCACAGCGGCTCCTCGTCTCCTCTGACTCTGACTCCCAGTAAAGAGGGCAGCTCGATGCTGTCTGGTCTCGAAAGCAGAAGGAACAACGAATTAAACGAGGTGCTGAGCTGGAAGCTGACTCCTGACAACTACCCGCAGAGCGACCAGCCTCCTCCGCCCTCCTACATGTATGGATCACAGCATCTGCTGCGGCTCTTCGTGAAGCTTCCAGAGATCCTGGGCAAGATGCACATCCCAGACAAGAACCTGAGGGCCCTAGTCAAACACCTGGAGCTCTTCCTCAGGTTTCTGGCTGAGTTTCACGAGGACTTCTTCCCTGAATCTGCGTACGTTTCGGCGTCGGAGGCGCACTACAGCATGAAGCACCCGCGGGCCGTCTGACGCGCGCCTCGACCCACGAACCGATCACAGCATCTCATGTAGAGGACATTTACATTACCGCTCCGTGCCCTGTAGAGGCGTCGGAGGACTGCGGATGACCTTCGTTAAGCCGTAAGGGGACGGGTTGCTTCATGTGAAGTCGCCGGAATGGAACCGCGTCCGTCCCGTTCACTGGGGCTGAAGAATGGACCCACGTTTCCATTTCCCCTTTCGCTGCCCGAGCCTGTCATTGACTTTGAATGCAAAGCGACTGACTGCGTTCGTCCTCCTGCTGTCGTGCGTGTTTATCTCAGTGTGTCAGGCGAGCTTGGGAGACAAAGGCAAGCCGCTCTGAAGACGGGGCTGACTTTTAACGGCTGAAACCGGTCAGGGTCTCGTTCTTTTCACACTTTCTGCTCGGCCTGATGTTTAAGTTCCTGCTTTTATATCTCCGATTCTACCTGTCGTTCTGTGTTTAAATGTTCgagattatacattttctgcaagGGAATGTTCCTCCCTATATCTGTTATTAGTCGTACACTCtccaaattatattattgtccTTCCATTTTCAGGAGAAATGTCAATAATATAAACTGCTACAGAGAATCTACTCCAGTTCTGGTCTGTTATGAAACATCCAGAACAAGTAAAAACtttcaaagaaacattttttgttctcAGTCCTTGTTTCAGTGCGTCAGTTTAAAATTTGTACGAGTATCCAATTGTTTCTGAGAAATGTATGTCTATAATATCCTCACTGaggttagtttttgtttgtctgtagctcaatatgtaaatgatttttaaatgtgtcagtGCCTGCCTCCCACAGTCCTGCTTTTCTCATTGTCTCTGTAACTGACACACATTACGTCAATCCCATCATGATGCAGGGAGTTCAAAAAGCGACACAAACTTTGACTGAATGATTCACTGTCATTCCCCCCTTCCATAACACCCTTCGGTTCAGCTGTTTCCGTTGTTTGTATCCTGTTTGATGCagggggaggtggggaggggaagtgaaatgaaagcaaaaccCCCACAAAGTCTGCTAAGGGACACAAAAGAGAAACCCAAATCTATACCCAATGACTATTAGCGAAACGGCATTTTGTGAGAAGAACTGCCCTCGTTTGAGTATTTGGATCAGAATGAGAgatgctgtaaaaataaacagaactgaCGCACACCTGAGTAGGTCCACGCATTCTACTTTTAAGAACTTAATATTTTGGAATTGCATTCAGCTAAATCAACGGTC

Function

symbol description
msl3 Enables DNA binding activity; histone acetyltransferase activity (H4-K16 specific); and methylated histone binding activity. Involved in histone H4-K16 acetylation and regulation of transcription, DNA-templated. Located in nucleus. Part of MSL complex. Implicated in Basilicata-Akhtar syndrome.

NR:

description
PREDICTED: male-specific lethal 3 homolog isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K18403 MSL3; male-specific lethal 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014192 True 2974 mRNA 0.51 13 3933258 3950277

Neighbor

gene id symbol gene type direction distance location
AMCG00014186 clcn4 coding upstream 304176 3617227 ~ 3629082 (+)
AMCG00014187 NA coding upstream 318177 3595095 ~ 3615081 (+)
AMCG00014188 NA coding upstream 350313 3582619 ~ 3582945 (+)
AMCG00014183 NA coding upstream 373549 3558918 ~ 3559709 (+)
AMCG00014182 NA coding upstream 378524 3527017 ~ 3554734 (+)
AMCG00014194 NA coding downstream 96694 4046971 ~ 4081904 (+)
AMCG00014195 prps2 coding downstream 138086 4088363 ~ 4098941 (+)
AMCG00014197 NA coding downstream 155907 4106184 ~ 4118772 (+)
AMCG00014199 NA coding downstream 254878 4205155 ~ 4220124 (+)
AMCG00014198 NA coding downstream 273267 4223544 ~ 4227643 (+)
G68189 NA non-coding upstream 449609 3410978 ~ 3483649 (+)
G68167 NA non-coding upstream 557469 3375585 ~ 3375789 (+)
G68166 NA non-coding upstream 558110 3374837 ~ 3375148 (+)
G68153 NA non-coding upstream 705132 3226859 ~ 3228126 (+)
G68151 NA non-coding upstream 706759 3224574 ~ 3226499 (+)
G68292 NA non-coding downstream 4089 3954366 ~ 3955265 (+)
G68317 NA non-coding downstream 133486 4083763 ~ 4083964 (+)
G68374 NA non-coding downstream 343049 4293326 ~ 4293526 (+)
G68376 trappc2 non-coding downstream 344540 4294817 ~ 4295819 (+)
G68422 NA non-coding downstream 550587 4500864 ~ 4550002 (+)
AMCG00014146 NA other upstream 1222929 2706840 ~ 2710329 (+)
G67896 NA other upstream 1803113 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 2030571 1900220 ~ 1902687 (+)
G67801 NA other upstream 2052217 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 2095133 1835432 ~ 1838125 (+)
AMCG00014196 NA other downstream 177199 4127476 ~ 4131718 (+)
G68475 NA other downstream 698923 4649200 ~ 4651964 (+)
G68830 NA other downstream 3395918 7346195 ~ 7349467 (+)
G68848 NA other downstream 3463363 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 3514226 7464503 ~ 7482560 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location