AMCG00014196


Basic Information

Item Value
gene id AMCG00014196
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4127476 ~ 4131718 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014196
AGTCCGCCGCCGCGTCCAGACAGAGACTGATCTCCGCGCAGTCGCACCCTGATATCCTGCAATCATGTCTGACAAACCAAACATGGAGGAAGTGACCAACTTCGACAAGACCAAACTGAAGAAGACGGAGACCCAGGAGAAAAATCCCTTGCCGTCAAAAGAAACCATTGAACAGGAGAAGCAGGCGGAGACGTCCTGAGGCGCGCCTGCGGGCTGCACTGTACATTCCACAAGCATTGCCTTCTTTTTTCACTTCTCTTAGCTGTAACTTTGTAACAAACTAAGTATGCGTTGTGATTGGACGAGACCAGATGACTGCGCTGCCCCCACCGCCCCCCCTACAGCACCAATTACAAGAAACTACTGACTGTCCGTCTGCGGGGGACTCGTCCGCCCGTCCCAGCGTCTTGGCTTTCTTTGATCCTCTCGTTGGCACCGACCCTCTGAACACGGAGGGGCTCCAGGGGGCGACCCACTCCTCCAGGGATCCACGTTAACATCTCCGTGCCGTGTGGCGTCCCGTGATCCgtaaaatgctttgaaaaaatcgagtgccattttttttttttatgatttaagtTCTTGGAATGCACaacccatttttgttttgatatgcaaataaaagtttaaaacgTGTAGCGCTTTGTGGTTCTTTTTAATGGAATAATGCAGACCATCGACACTGGAGACTGGAAGAAGAAGGGATTCTGTGTTTGAGTGCATTTCGGGACTCCATATTCAAATTTAAGGTTCATTgggatttttttggggggtgggggtagtgGTATTTNNNNNNNNNNTTTTTTCATCCTGTTTCAAGGCTTTCAGTAATGTGAGATGAATGTAAGAGATTTCAAGTTATAATAAACGTATTGCAGCTGCAATCTTCTGAATGTTACTGTAAAAAGCTGGAGCAACCGTATACTTTAGCACGAAACCTTTAAAGTAATGGAAACCAAAACTGTTTGAATAAAGTGGTTTATTTGCACA
>TU85370
GCTCACATTGTGCGGGGGCTGATAGTGAAGGGAAAGGTGAATATTGGTGTGCAGGAGTGCATATCGGGGCCTTTTTGTGCGCTCGGTGCGGTGACGTCACGGGGGTGATTTGCATATCTGGGGGTATAATTGCGTGGCTTGAGCGGCTGCTCGTCAGTCCGCCGCCGCGTCCAGACAGAGACTGATCTCCGCGCAGTCGCACCCTGATATCCTGCAATCATGTCTGACAAACCAAACATGGAGGAAGTGACCAACTTCGACAAGACCAAACTGAAGAAGACGGAGACCCAGGAGAAAAATCCCTTGCCGTCAAAAGAAACCATTGAACAGGAGAAGCAGGCGGAGACGTCCTGAGGCGCGCCTGCGGGCTGCACTGTACATTCCACAAGCATTGCCTTCTTTTTTCACTTCTCTTAGCTGTAACTTTGTAACAAACTAAGTATGCGTTGTGATTGGACGAGACCAGATGACTGCGCTGCCCCCACCGCCCCCCCTACAGCACCAATTACAAGAAACTACTGACTGTCCGTCTGCGGGGGACTCGTCCGCCCGTCCCAGCGTCTTGGCTTTCTTTGATCCTCTCGTTGGCACCGACCCTCTGAACACGGAGGGGCTCCAGGGGGCGACCCACTCCTCCAGGGATCCACGTTAACATCTCCGTGCCGTGTGGCGTCCCGTGATCCgtaaaatgctttgaaaaaatcgagtgccattttttttttttatgatttaagtTCTTGGAATGCACaacccatttttgttttgatatgcaaataaaagtttaaaacgTGTAGCGCTTTGTGGTTCTTTTTAATGGAATAATGCAGACCATCGACACTGGAGACTGGAAGAAGAAGGGATTCTGTGTTTGAGTGCATTTCGGGACTCCATATTCAAATTTAAGGTTCATTgggatttttttggggggtgggggtagtgGTATTTNNNNNNNNNNTTTTTTCATCCTGTTTCAAGGCTTTCAGTAATGTGAGATGAATGTAAGAGATTTCAAGTTATAATAAACGTATTGCAGCTGCAATCTTCTGAATGTTACTGTAAAAAGCTGGAGCAACCGTATACTTTAGCACGAAACCTTTAAAGTAATGGAAACCAAAACTGTTTGAATAAAGTGGTTTATTTGCACAGTTGTGTccaaaccttttcttttttttttttaattgccacaTAGTTTTAGTCACCCTCCCTGGTTGCACTAAGTCTCCACAGAACATGTCTCTGTACCTAGGAGTAAGATGACTTCCACAAGAGCTTCTGTCTTAATACTAGTGTATGGTCTGAAATGAAGAACTGGCTGCATTGAAATGGGATATTCTCTCTGCATTGAGGAAACTTCTCAATTTTAAAGTAAGATAACATCTCGAGTTACTGTCCCACTCACAGGAT

Function

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014196 False 990 mRNA 0.46 3 4127631 4129668
TU85370 True 1404 lncRNA 0.46 4 4127476 4131718

Neighbor

gene id symbol gene type direction distance location
AMCG00014197 NA coding upstream 8704 4106184 ~ 4118772 (+)
AMCG00014195 prps2 coding upstream 28535 4088363 ~ 4098941 (+)
AMCG00014194 NA coding upstream 45572 4046971 ~ 4081904 (+)
AMCG00014192 msl3,LOC106574410 coding upstream 177199 3933258 ~ 3950277 (+)
AMCG00014186 clcn4 coding upstream 498394 3617227 ~ 3629082 (+)
AMCG00014199 NA coding downstream 73437 4205155 ~ 4220124 (+)
AMCG00014198 NA coding downstream 91826 4223544 ~ 4227643 (+)
AMCG00014200 NA coding downstream 111092 4242810 ~ 4244022 (+)
AMCG00014201 rab9a,LOC106581920 coding downstream 159226 4290944 ~ 4291549 (+)
AMCG00014202 NA coding downstream 166623 4298341 ~ 4316679 (+)
G68317 NA non-coding upstream 43512 4083763 ~ 4083964 (+)
G68292 NA non-coding upstream 172211 3954366 ~ 3955265 (+)
G68189 NA non-coding upstream 643827 3410978 ~ 3483649 (+)
G68167 NA non-coding upstream 751687 3375585 ~ 3375789 (+)
G68166 NA non-coding upstream 752328 3374837 ~ 3375148 (+)
G68374 NA non-coding downstream 161608 4293326 ~ 4293526 (+)
G68376 trappc2 non-coding downstream 163099 4294817 ~ 4295819 (+)
G68422 NA non-coding downstream 369146 4500864 ~ 4550002 (+)
G68434 NA non-coding downstream 452756 4584474 ~ 4588428 (+)
G68473 NA non-coding downstream 515992 4647710 ~ 4648213 (+)
AMCG00014146 NA other upstream 1417147 2706840 ~ 2710329 (+)
G67896 NA other upstream 1997331 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 2224789 1900220 ~ 1902687 (+)
G67801 NA other upstream 2246435 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 2289351 1835432 ~ 1838125 (+)
G68475 NA other downstream 517482 4649200 ~ 4651964 (+)
G68830 NA other downstream 3214477 7346195 ~ 7349467 (+)
G68848 NA other downstream 3281922 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 3332785 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 5871340 10003058 ~ 10008648 (+)

Expression


Co-expression Network