AMCG00014197


Basic Information

Item Value
gene id AMCG00014197
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4106184 ~ 4118772 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014197
ATGGCATGTGAAAGACCTTCAAAGTGGATAATGATCATCCTTCTCTTGGGGTTTCTTACCTCCAAACTCTTGGCCATTGGCTGGTACCCCAAAAGTCTGCCATGTAACGTAAGTCTCCAGAAGAACGGGAGTTCTGTAATTGTGGACTGTAATGAAAGAAGACTGACAGAGGTACCAAAAGGGGTGCCAGGAAATGCAACAAACTTGACAATGACCATCAACCACATCCCCAACATTTACAAGACTTCCTTTGTAGGCCTGGACAACCTCACAGAGATTGATTTCCGCTGCAACTGTGTGCCTATAAAGATAGGGCCCAAGGACCGCATGTGCACAAAAAGCCTGACTGTGGAGGATGGGAGCTTTTCTTCGCTGAAGAACCTGAGGGCACTGTACTTGGATGGCAATCAGCTCTCCAGCATACCTAGGGGACTTCCTCCCAATCTGAAATTGCTCAGCCTCGAAGTGAACAAGATTTTCACCATTCTTAGGCAGAACCTATCAGAACTGACAAACGTGGAGATTCTTTATTTCGGACAAAATTGCTACTATCGTAACCCCTGCAATACATCGTTTGAAATCGAGGAAGGCGCATTCCAGCAACTGGAGAAGCTGACTTTGTTATCGCTCAAATCAAATAACCTATCTTATGTTCCTCATAATCTTCCTTCAAGTCTAAAGGAGCTGTACCTTTATAATAACAACATTCAAAGAATATCAGAAGacgattttaaaaatatgaccaATCTAGAAACACTGGATCTGAGTGGAAACTGCCCACGATGCTATAATGCCCCCTTCCCTTGTGACCCCTGTCCGAACGATTCCCCATTGCAGATAGATCTACTAGCATTTCAGACtttaaagaaactaaaaatattgcGCCTTCACAGTAATTCTCTACGCAAGGTCCCTTCGGAATGGtttcaaaacatgaatgaaCTTAAGGTTTTAGACCTTTCATCAAACTTTTTGGCGACAGAGATAACTGTGGCCATTTTCCCCAAATTCCTGCAAAACCTTGAAGAGCTTGACCTTTCCTTCAATTATGAAAGACAGCGGTACCCAGCTTCACTTAGCCTCAGTCAATCATTCTCTTCATTAACTTCACTCACAGTCTTGAGGATCAAGGGTTATGTTTTCAAAGAGCTGACAAGCAGAGATTTAGAACCGTTAACGATGCTCCATAACCTGGAAGTAATTGATCTTGGCACCAACTTCATAAAACTGGCCAACCTCAATATTTTAAGACAGTTAAGaagttttcaaataataaatctcTCAGACAATAAAATATCCACTTCGTCCGAAGAAGGACCGAGTAATGGGCGGTCTTCCCTTTATTCTCCAATGGGAAGCAGTGTCCAGTACAATGATGGAGAAATCCATTATTTCAGGTATGATGAATATGCAAGAAGCTGCAAATCGAAGGACAAGGAACCTGGGTCTTTCACCGTGTTTGTGAACAAAAAATGTAGCCAGTTTGGAAAAGCACTAGATATTAGtaggaataatatatttttcattgatcCCAAAGAATTTATATTACTCGGAGAACTTAGATGTCTCAACCTCTCCGGCAATGCCATGAGTCAGTCATTAAATGGCTCTGAATTTATTCACTTGACCAATCTGCagtatttagatttttcattCAACCGTCTTGATTTGCTGTATGCTACAGCTTTCCAGGAACTGCAGAATTTAGTCATTTTAGATATCAGTCATAACAGCCATTACTTTTTATCCGAGGGATTAACACACATGTTAAATTTTACAAATAACTTGCCcaaactgcaaaaaataatgatgaactACAATAGAATTTCCACATCAACCAACACCGAGCTGGAAAGCAATTCCTTGGAAGTCCTGGAGTTTAAAGGAAACCGTCTAGATGTTTtatggagagatggagacacGCGAtacagtcattattttaaaaaattattcCGCTTAAAAGTCCTTGACATCTCTCACAACAATCTTAACTTCATCCCTGAGCAGGTTTTCCGAGGCATGCCAGACCAGCTCTCTGAGCTCTACTTAAACAATAACAGGCTGAAAACTTTCAACTGGGGGAAGCTACAATTACTCCCTCACTTGCAGATCTTAGACCTCAGTAACAACAAGCTAACGACTGTGCCTCGTCAGCTCTCCAACTGTACCAGATCCCTGAAAAATCTTCTCTTGAGCAAGAACCAAATCTCCAAACTGACCACGTATTTCCTGAGGGACGCATTTAACCTGAAGTACCTGGACATCAGCTACAAccaaatcaaatacatacagCAGTCCAGTTTCCCGGAAAACGTTTTGAATAAATTAGATATGCTACTGCTGCATGGGAATAAGTTCATGTGCACGTGTGACGCAGTCTGGTTCACAGTGTGGATCAACCAAACGACTGTCAACATTCCTCGACTTGCTACAGACGTCACCTGTGCGGCCCCTGGGGCTCAGAGAGGCCGAAGTGTCATATTTCTGGATCTGCAGACGTGCCAGCACAACTCCATTTCCATCATACTCTACATCTTTCTAACTTCCTTCATTCTCTGCTTCCTCACGCTGTCAATTTCCAGTCATCTCTTCTTCTGGGATGTCTGGTACATCTATCACTTCTGCACTGCCAAGGTGAGGGGCTACCATCCCCTGTCGTCACAAAACACGTGCTATGATGCGTTTGTCGTATACGACAGAAAGGACGAGGCAGTCTCCGAATGGGTTTTCCACGAGTTAAGATCTCACCTGGAAGAAGAGGGGGACACACACTTCCTGTTGTGCTTGGAAGAGAGAGACTGGATGCCTGGTTGCCCACTCATTGACAATCTATCCCAGAGCATACAGCAAAGCAGAAAGACTATTTTTGTGCTCACCAACAAATACATCTTGAGTGGGAGTTTCAAGACAGCCTTTTACATGGCTCATCAGCGGCTCATGGACGAGAAAGCTGATGTAATTATTCTGATTTTCCTCGAGAAATGCCTGAAGCAGTCCAAATATCTCAGGCTACGTAAAAAACTCTACAGAAGCTCTGTTCTTGAGTGGCCATCAAATCCCCAAGCCAAGCATTTGTTTTGGCTGTGTTTGCGGAATGCAATGACTGCAAATGGCCACACACATTATAATCCGTTCCTTCCTGCACATCGCTGGGTTTCAAGGTATCTGCCATGTGACGTGAATGTTAGAAATAACACTACTGTGAGCTTTGACTGCAGTTTTAGACGACTGACTGAAGTCCCGGCTGATGTCAACATGAATGCGACAACCCTTAATCTGAAAGGAAATCAAATACAACATATTTCTAACACCTCTTTCCGGAATCTGAAGAACCTTAAAGTTCTAACCCTAAACtggaacaataaacacaaacctgGCCTCACCATTGCGAAGGACACCTTTGCCGCTTTGGCCAATTTAGAGATTTTACTTCTGGATGGAAATTTGCTCACTGACATACCTACTGGCTTTCCACCCGGGCTCAAGGTTTTAAGTcttaattcaaacaaaatagcTTCCATTGGATCGGAAAACTTCACTGGTATCCCAAATGTCACAGAGATCAGGATTAACAGGAACTGTTACTATCACAATGGTTGTAATGACTCTTTAGCTATACAGAACGGGACCTTCTCACAGCTCACACATTTGTTACGTCTGTCCTTGATTTTTAACAGGTTGGCCAGGGTACCCCTAGACCTGCCTACATCTTTACAGCTCCTTCGtcttagtttaaataaaattgagCATGTCGATCATCTGGACTTTCAGAATCTGTCCGAACTCAGGATGCTGGATCTTTCTGGAAACTGTCCAAGGTGCTCCAATGCCCCGTTTCCTTGTGAAACTTGCGAGACTGAGAAAGGCGCAATAAAGGTGCATCCACTAGCTTTTCATAACCTTACACAGTTGGAAGAACTGCGGCTTTCCGGAAACTCGCTCTTTAAACTCCATGCCTCATGGTTTCAGAATTGTCCTAAGCTAAAGTATCTGTACCTTTCCTTCAACTCTTTAATCAGTGAAATTGCCACCGGAGAATTTCTTACCGTTTTACCGCACGTCGAAGTTGTGGACTTGTCATTCAACTTCGATCCTAAGTCCTATCCGAGCAGAATGACACTCTCTCCAAACTTTTCCCAATTACTTTCGTTAAGGACTTTGCATTTTGAGGGTTATGTATTCAGAAATATCGAGGGCAATGATCTGCAGCCTCTCTTCAACCTCCAAAACCTTTCTGTGTTAAACTTCGGCACAAACTTTCTCCAGTATGTTGATCTCACCCTGTTTCAAAACTTTTCTAATCTTTCCTTGATATATCTCTCAGAAAACAGACTTGCATCCCAGTCAAGGAGAACGAACCTGTCTTGCAGCAGCGAAAATGACGCACACCACATTTTAAGCAGACCACTGTTAAAAGACCGGGCCATTGATAAAAGAGATCAAAACTATATTGTTCATAAAGATGGAGACTATCGTTTAAGTCTCCCATTTGTTAAGCCCAAATGTCTTCTTTACGGACCAGCTCTTGATCTcagtaaaaacaatatattttatatcaccCCTGAACTCTTCGAAGGTCTAAAAAATTTGACATGTCTGAATCTTTCAGTTAATTCTATCGCAGATTCTTTCAACGGCACTGAATTCATTCACTTACCAAATCTCCGGTACTTAGACTTGTCTCACAATAAAATAGACCTGGCATATGACTATGCTTTTTCTGAGTTAAGCTATCTGGAAGTGTTGGACATTAGTTACAATCCGCATTATTTTTTGGTGGCAGGAGTGATACATAACTTAGGTTTCCTCAAACACCTCCACTTTCTGAAAGTGTTGAACCTCAGCTGGaatgaaatatttactttaagtAAAGATAAAGAGATGAGCAGTGAGTCTCTGAACAAGCTAGATTTTCAAGGAAATCGACTGGACATACTATGGAAAGATGATAAAAGATATATAGGACTTTTCGCAAAGCTGGTGAACTTGCAATATCTTGATCTGTCCTACAATAAGCTCCAGAACATACCATCAgctgtttattataatttaccaAAGAACCTGACGCATCTcaatttaaacaacaataaacttAAATGTTTTCAGTGGGAGCATCTTATAAACTTATGGCATTTAGAAGTCTTGGATTTAAGCCATAATAACCTGGAAAATGTGTCTGAAAAGCtcacaaatcacacaaattCCCTCATAAGGCTTGACCTGAGCTACAATAAGATCGCTCAGctctttgattattttcttcagGGCGCAAGAAGCCTCCATTTTCTATATTTGAATCACAATAATCTGAGACTCTTAAACGCGCATACGTTCCCCTCCGGGCCAGACACCTCCTTGAAAGTCTTATCCTTAAAAGGAAACCCATTTCAATGCACATGTGAGATATTTGACTTCAAAATGTGGATCAATAAAACTGACATTGAGATACCAAGGCTGGCCACAGATGTCACCTGCGCATCACCTGAAAATCGGAAAGGAATGGGTATCATAACTTTTGACCTTCAGGAATGTATCAACGATAGTACAtctgctgtattgtttttgctttctacCTTAACTATTGTTCTGATTATTACAGTAGCTATaatgcagcatttgttttactgGGATGTCTGGTACATTTTCCATTACTGCAAGGCAAAGATTAAGGGTTACCGTTACCTGGCATCCACAGACAACATCTACAATGCCTTCATCACGTACGACACTAAAGATCCAGTCGTCACTGACTGGGTCTTCAATCACCTCCGAGTCCAGCTggaggagaagggggaaaaatTCCTCCCGATTTGCCTGGAGGAACGGGACTGGCACCCAGGGGCCCCTGTCATAGACAACCTGTCTCAGAGCATCCGGCAAAGTCGGAAGACCGTGTTCGTCCTGACGGAGAGGTATGTGAACAGTGGGAACTTCAGGTTAGCCTTCTACCTGGCCCACCAGAGGCTGCTGGACGACAACACGGACGTGATCGTGCTGGTGTTGTTGGAGCCCGTCCTGCAGTACTCCCAGTTCTTCAGGTTACGGAAAAGACTGTGTCGGAAGACCATCCTAGAGTGGCCGAAGAACCCTCACGCAGAAGACTGGTTCTGGCAGAGTCTCAGAAACGTAACTCTTCCCTTCCACTGGCACGGCTCCttaatcctgtttttttcttattttgtacacGGAAAACTTGAATATCGTTGGACTTCGAGAACGCTTCCCTGTGATGTCACTGAAAATAAGAATAACAGTGACATCATTTTTAACTGCAGTGAGCGCCACCTGACGGAAGTGCCACAGGGGATTTCTGCGAATGCAACTAAGGTGCTCCTTTTGGAAAACTCAATCCGTAATGTTTCCGTGCAGTCCTTCTTCAACCTCCAAAACCTCACATTAATAAACCTCAACTGGAATGGCAAAGACAAGGAGGTAAGCATTGCAGACAGAACATTCTCCAGGTTGACAAACCTACAGGAGTTGCATTTGGATGGCAATGGTCTTTGGAGGATTCCCAAATGGCTCCCACTGGCACTGAAACTCCTCAGTGTGAGAAAAAACAGCATCATCTCTGTTAGGAGAAACTATTTTTCTGAGCTGGACAATCTGGAAGAAATCTATCTGGACAAAAACTGCTACTTCTGGAATCCATGCAATAAGTCCTACCACATAGACAATGGAAGTTTTGCCAATCTTACGCAGTTGCGCATTTTGTCGTTGACCTATAACAACTTAACCACTGTTCCAAAAAACCTGCCGCATTCCTTAGAAGACCTTTACCTCGGATCGAATCAAATACAGCGTGTCAATGAGCATGATTTCAGCAGCCTGCCAGGACTGCAGATTCTCGACCTCTCGGGTAACTGTCCTCGATGTCACAATGCCCCGTTTCCGTGTGTGCCCTGTCCCAATCACTCCATCGAGATCCATCCTCTGGCTTTCCACAATCTGACACATCTACAAGAGCTACATCTCTCGGGGAACTCGCTCCGCAGCCTCCCAAGCTCTTGGTTTGACAGTTTACAGAATCTGCAACAGctgtttctttcctttaattttCTAACCAGTGCAATTGCCGAAGGTAACTTTTTGGACAACTTAGCTCAACTTAAAAAGATAGACTTGTCCTATAATTACAACTTCAAGGCCTACCCTGAGACCCTCACACTTTCACCCAATTTCTCAAAACTGGAATCCCTTAAAACTTTTCATATCGCTGGCTATGTTTTCCAAAAAGTATGTGAACGAGATTTAAGTCCACTTTTCAATCTGAAGAATCTCTCTGTGCTGAATTTGGGTACAAACTTCATCACATCCACAAAGTTGTCAGTGTTTCAGAAATTTGAAAACTTGAAATTGGTATATTTATCAGAAAACAGACTTGCACCTGCACCACACCTAAACGATATGATTAATGGCCCAAACACAGGTCTGCGCTGGAAACCCCCAAATCTGGGCTATAGACTATCAAAGGAAAAGGAGTTTGACTATGAATTATCTCATCTACTTGTGAAGCATGAGTGCTTTGTCTATGGTAAAGTGTTAGATCTCAGCTcgaataatatatttttcatttacccTGAGCAATTCGAAGGTAATGGCAACATCTCCTGTCTGAACCTCTCGAAAAACGGTCTCGCGACTGCCTTTAACGGTTCTGAATTCACCCATCTCCCGAGGCTTAAATATCTAGACCTCTCCTTCAATAAGATTGATTTAGCCTACGATGCAGCGTTTTCAGAATTAAAGGAACTTGAAGTCCTTGACATCAGTTTTAATCctcattatttttctgtgtcagGAGTGACACACAACTTAGGCTTCCTAAAACACCTGGAGTTTCTGAAAGTGCTCAACCTGAGCCAAAATAACATCTTTACTTTAACAAATAAGGAGTTGAGCAGCAAATCCCTTAAGGagcttcattttcaaaataaccAACTACACGTATTATGGAAAGAGAACGACCATTCTTACTGGGGGATTTTCAAAAATCTTTTGAATCTGTTGCACCTTGACATATCgaataataaactaaaaactattCCATCTGGAGTTTACAGCCATTTGCCCCAAAAtttaactacatttattttaagtaaaaatgaACTGATTAGTTTTGACTGGAAAaagctgaaacattttaaacacctcAAGGTTCTGAATCTGGGGGGTAATAAGCTATCTTGTGTGACGGCACACCTCTCAAATTACTCAAAGACACTCGAACTTCTTGTCTTAAGCAATAATTATATTGCTCGGCTCACCGGTGGTTTTCTCCAGGGTGCAAAATACCTTTTCTACCTTGATTTAagttataataaaatgaaaataataaacgaGTCAGATTTGTTTACCGGACCAGACAGCAATTTGAAGACCTTCTCATTGAAGGGTAATCCATTTGACTGTACATGtgatattttagatttgattCTGTGGATAAAGAACAATGATATTGACATACCGCTGCTGGCCTCAGATGTCACCTGTGCCATGCCTGCagacaggaaaggaaagagCATTATTACCTTTGACCTCAAGGAATGTGTTGATGACAGCATAGCAGCCATTATTTCTTTTCTCACCTCCTTTCTTATTTTGTGCACTATGGCCGTAGCTGTCATGATGCATGTTTTCTACTGGGATGTCTGGTACCTTTACCACTTCAGCAAGGCAAAGATTAAG

Function

GO: NA

KEGG:

id description
K05404 TLR7; toll-like receptor 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014197 True 8688 mRNA 0.42 3 4106184 4118772

Neighbor

gene id symbol gene type direction distance location
AMCG00014195 prps2 coding upstream 7243 4088363 ~ 4098941 (+)
AMCG00014194 NA coding upstream 24280 4046971 ~ 4081904 (+)
AMCG00014192 msl3,LOC106574410 coding upstream 155907 3933258 ~ 3950277 (+)
AMCG00014186 clcn4 coding upstream 477102 3617227 ~ 3629082 (+)
AMCG00014187 NA coding upstream 491103 3595095 ~ 3615081 (+)
AMCG00014199 NA coding downstream 86383 4205155 ~ 4220124 (+)
AMCG00014198 NA coding downstream 104772 4223544 ~ 4227643 (+)
AMCG00014200 NA coding downstream 124038 4242810 ~ 4244022 (+)
AMCG00014201 rab9a,LOC106581920 coding downstream 172172 4290944 ~ 4291549 (+)
AMCG00014202 NA coding downstream 179569 4298341 ~ 4316679 (+)
G68317 NA non-coding upstream 22220 4083763 ~ 4083964 (+)
G68292 NA non-coding upstream 150919 3954366 ~ 3955265 (+)
G68189 NA non-coding upstream 622535 3410978 ~ 3483649 (+)
G68167 NA non-coding upstream 730395 3375585 ~ 3375789 (+)
G68166 NA non-coding upstream 731036 3374837 ~ 3375148 (+)
G68374 NA non-coding downstream 174554 4293326 ~ 4293526 (+)
G68376 trappc2 non-coding downstream 176045 4294817 ~ 4295819 (+)
G68422 NA non-coding downstream 382092 4500864 ~ 4550002 (+)
G68434 NA non-coding downstream 465702 4584474 ~ 4588428 (+)
G68473 NA non-coding downstream 528938 4647710 ~ 4648213 (+)
AMCG00014146 NA other upstream 1395855 2706840 ~ 2710329 (+)
G67896 NA other upstream 1976039 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 2203497 1900220 ~ 1902687 (+)
G67801 NA other upstream 2225143 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 2268059 1835432 ~ 1838125 (+)
AMCG00014196 NA other downstream 8704 4127476 ~ 4131718 (+)
G68475 NA other downstream 530428 4649200 ~ 4651964 (+)
G68830 NA other downstream 3227423 7346195 ~ 7349467 (+)
G68848 NA other downstream 3294868 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 3345731 7464503 ~ 7482560 (+)

Expression


Co-expression Network