AMCG00014207 (LOC108443135,LOC102799111)


Basic Information

Item Value
gene id AMCG00014207
gene name LOC108443135,LOC102799111
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4460775 ~ 4498956 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014207
GGAGCTTCTCTTGAAACAAAGATTCCTCCGATTTACCCAACATAGCTTTTGTATACGacctcatttaaaaaaaataatgtcccTGGAGTGGAAGAAAGCTGATGGCTAATCACTTTACACACTGCAGTGCGAGGACCCCTTAAATCCACCATGTGTTAAAGCTTCTTTTGGGGGGAAACGAATCAGTTCTCACAGTTCACATGCGTGCgggtctctgtttctctctccacacTGTAACTGGGTTTCCTTCTTCCACTGAACTATGATCCCCAGGACTGGAAAGTCTCCTGTTCATCCTCCACCGCGCACTAAAATGATCTACTGGGTTGTACAGAAAGCAATGTTGACTCCTCGGGGATCTTGCGTTTGACCAGCTTTCGCCCATGGAATAATTCAAAGAAGTGTGCAAATACCCACAGACATCAAGAGGAATGCATCGCCCGCTTGTCAAAATCCTGACAACCTTATTTGCATGTTTCTTAGAGCCCAACAACTTCAGGGTGGCAGATGCAAAGGAGCATGAGTCAAGATCTTCAGGAAAAAGCACCTCATTGACCATGTCTCCATCAGATTTTTTGGACAAATTAATGGGCAGAACATCGGGTTATGATGCAAGAATACGACCCAATTTCAAAGGTCCCCCAGTTAATGTTACCTGCAACATATTTATCAACAGCTTTGGTTCAATAGCAGAAACAACAATGGACTACAGAGTGAATATTTTCTTGAGACAGCAGTGGAACGACCCGCGGTTGGCCTATAGCGAATATCCTGATGACTCTTTGGACTTGGACCCGTCTATGCTGGACTCCATCTGGAAACCTGATTTGTTCTTTGCCAACGAGAAAGGGGCCAACTTCCATGATGTAACAACAGACAACAAGCTCCTGAGGATTTTCaagaatggaaatgttttgtacAGCATAAGGTTGACTCTTATCTTGTCCTGTCCAATGGATCTGAAGAACTTTCCTATGGATGTTCAAACCTGTGCGATGCAACTGGAGAGCTTCGGCTACACAATGAATGATTTGATCTTTGAGTGGCTGAATATAGGTCCGGTCCAAGTAGCGGACGGGCTGACTCTGCCCCAGTTCATCCTGAAAGACGAGAAGGAGCTGGGCTACTGCACCAAACACTACAACACAGGAAAGTTCACTTGCATCGAAGTCAAGTTTCACCTGGAGCGACAGATGGGATACTACCTGATCCAAATGTACATCCCCAGCCTGTTGATCGTAATCCTGTCCTGGGTTTCCTTTTGGATTAACATGGATGCAGCACCGGCGAGGGTGGCTCTGGGCATCACCACGGTCCTCACGATGACCACACAGAGCTCGGGGTCCCGGGCATCGCTGCCAAAGGTTTCCTATGTGAAGGCCATTGACATCTGGATGGCCGTCTGTCTTCTGTTTGTGTTCGCTGCTTTACTAGAGTACGCAGGAGTCAATTTTGTCTCACGGCAGCAGAAAGAGTTTCTCCGGTTGAGAAGAAGACAGAGAAGACAGAACAAGGAAGATGACGTGGTGAGGGAGAGCCGATTCAACTTTTCTGGGTACGGTATGGGACACTGCCTACAAGTCAAAGATGGCACAGCCGTAAAAACTGCCCCCCCCAATCCTGCCCCCCCGCCgctcagagacacagagaccaTTCGGAAAAAATTTGTCGACAGAGCGAAAAGAATTGACACAATATCCCGGGCTGCCTTCCCCTTGGCCTTCTTAATTTTTAACATCTTTTACTGGATTACGTATAAGATAATACGACACGAGGATATCCACAAAGAGTAGCTGAATGGGCTTGCTGGATCTATTAAACTCTCATtgccaaaaaaaattaaaataataaataaaaaacaaacaataaaagattTCATGCAACGGCGAACAATTCAAAGGTGTCCTGCTGTTTCTTGAATAATATTCACAGCTGAATAGAAAACATCTGCCTTGGAACCGAAGCAACATTAACTGGAAACGTACAATAACTTTGCCTAATACTTTCCACGGAAAAGAAGAAATGTTCTTCCGAAACTTAAGGTAGACATAAAAAGAGGCTCAAATGTTTCTGATAATATtcatgacaaacaaaacaaaactgagaagctaatgatatatttttctgttgttatttaaTGCTGCAGAGGTGTTTTGGTGACACTGATTTTAGTgattaaaagtacaaaatagTAAAGAATGGACCAAATTTTTCAAGATAAAACTGCCTTTCTATTTGTATGACTAATCCAATAACATTCCATTAATGCTGaaagagtaaaaacaaaaagggaggATTATTGTGTgataaatcagtttttaaataatgaagaaaataaaaatgtaactggatTTCAGAGAAGTTTATGTTTTGGGCTTttgaatttagattttttgatGATCCCTTTTATTCTATAGGCAGTTGCTAGATACATGCACACAATGTTACAGCTGAAGTCTACAACTGAGTCAATGTATCTGAAACATGTACCAGAACTCAATCAAAAATTTAACTTTCCACCACTTTCAAATTATAAACCCACTACTTTCCATTGTGTAGATGAATTTACACATTGAGATTGCATATTTGATGGGTGAATGGAATTGTATATTTAATCTAGacttgtaaaatgtgtgtattatctAAGATTCGATTTTACATATCAGTCTAGTTAATACACAAATTGTCTAATTTCAGACTTAAGCTGTAACAAAGTTTTTTAAGCTGTCTTTTACTCATCGGTACGCTTGGATtttctatgtattattatttttatgatttgcTTTGGTTTACAATGCATATAAAGGTGCCATACTGTATAATACCTTCAGTGCATTTCAACACCAttcatttatacaaatacaaattaagatttttttctttttaatggacCAGCTCAAATTAAAGTCTGCAGTTGAgctatttatcattttatattggTGTAGTTGCAATTGACAGCTTTTTGTAGGTAGGTTTGGTGTAAAGATGTTTACAAAACCTCGGATTTATATCTTCTTCAGTGACTATAAAGAAGTCATCAATCGATTTGAAATTTCAAACGTTTTGTGATTACATATCCCATTAACCCCTTCAGTGCCAACAGTATGTGCTTAGAATGGTTGTATTTCATACCGTATGTTCTGAAAGATGTCCTTCACACAgtatgtaagaaaaaaaaaaaagtatctatatatttaagatGTAAATGGGATTATGCCTAGAAAGAACTCACAGTGTTTTATTctcaaaagcatttattttgaacaggTCATCTTTGTTATACTTCAATAAAGCTAAATGTGCTTCATA

Function

NR:

description
PREDICTED: glycine receptor subunit alpha-2-like isoform X1

GO: NA

KEGG:

id description
K05194 GLRA2; glycine receptor alpha-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014207 True 3309 mRNA 0.39 9 4460775 4498956

Neighbor

gene id symbol gene type direction distance location
AMCG00014202 NA coding upstream 144096 4298341 ~ 4316679 (+)
AMCG00014201 rab9a,LOC106581920 coding upstream 169226 4290944 ~ 4291549 (+)
AMCG00014200 NA coding upstream 216753 4242810 ~ 4244022 (+)
AMCG00014198 NA coding upstream 233132 4223544 ~ 4227643 (+)
AMCG00014199 NA coding upstream 240651 4205155 ~ 4220124 (+)
AMCG00014209 NA coding downstream 21846 4520802 ~ 4548407 (+)
AMCG00014208 NA coding downstream 69713 4568669 ~ 4583209 (+)
AMCG00014213 anos1,LOC104963477 coding downstream 224698 4723654 ~ 4746002 (+)
AMCG00014214 NA coding downstream 338767 4837723 ~ 4851433 (+)
AMCG00014216 hdd1a coding downstream 452374 4951330 ~ 4958249 (+)
G68376 trappc2 non-coding upstream 164956 4294817 ~ 4295819 (+)
G68374 NA non-coding upstream 167249 4293326 ~ 4293526 (+)
G68317 NA non-coding upstream 376811 4083763 ~ 4083964 (+)
G68292 NA non-coding upstream 505510 3954366 ~ 3955265 (+)
G68189 NA non-coding upstream 977126 3410978 ~ 3483649 (+)
G68422 NA non-coding downstream 1908 4500864 ~ 4550002 (+)
G68434 NA non-coding downstream 85518 4584474 ~ 4588428 (+)
G68473 NA non-coding downstream 148754 4647710 ~ 4648213 (+)
G68497 NA non-coding downstream 286370 4785326 ~ 4785601 (+)
G68509 NA non-coding downstream 358073 4857029 ~ 4857230 (+)
AMCG00014196 NA other upstream 329057 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 1750446 2706840 ~ 2710329 (+)
G67896 NA other upstream 2330630 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 2558088 1900220 ~ 1902687 (+)
G67801 NA other upstream 2579734 1879091 ~ 1881041 (+)
G68475 NA other downstream 150244 4649200 ~ 4651964 (+)
G68830 NA other downstream 2847239 7346195 ~ 7349467 (+)
G68848 NA other downstream 2914684 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 2965547 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 5504102 10003058 ~ 10008648 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031002 glra4b coding NC_007116.7 CM002889.2 22515347 ~ 22544151 (-)
grasscarp (Ctenopharyngodon idella) CI01000339_01327907_01343305 GLRA3, GLRA4A, GLRA4B, GLRA4 coding CI01000339 null 1327717 ~ 1344940 (-)