AMCG00014208


Basic Information

Item Value
gene id AMCG00014208
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4568669 ~ 4583209 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014208
ATGGCCTCCCCGCGCCTGGAGACTTACTGCTGCCCCAACAGGGACGAGTCCACCGGCTACGTGGTCAACTTCCAGCCGCGCTTCTTCAGCGCCATCTGCGTCGGCAGCGGCAGCGTCAGCCTGGTCCTCGCCGTCCTGCAGATCCTGCCCAAGCGGCTGCGGGGCTACCGGAGACTGGGCCAGTACCCCCTCCCGAAGCCGGCCTCCTCCGCCCGCATCCTCCTCATCATCAGCCTGTGCGACGTGCTGGGATGCGCAGGGATCATTCTCAGATCGTCCGTGTGGCTCAGCTCGGAAAACTTCATCGCCAGGATTTCAGTCACCAATACCACGGAAGTGTGGCCGGCTACGTTCTGCGTGGGCAGCGCGATGTGGATCCAGTTATTTTATAGCGCCTCTTTCTGGTGGACATTCTGTTACGCTGTGGACGTCTATTTAGTTGTTAAAAGATCAGCTGGACTAAGCACCATCGTGTTGTACCACATGATCACGTGGGGGCTGGCGGTCTTGCTGTGTGTGGAGGGAGTGGCGATGCTCTACTATCCTTCCATTTCAAGCTGTGAAAACGGACTAGAACATGCCATCCCCCATTACATCACCACCTACGCGCCATTACTGCTCGTGCTAATTGTCAACCCGGTACTGTTTGGAAGGACCGTGTCAGCCGTTACATCACTACTGAAAGGAAGACAGGGGATATACACAGAGAACGAGAGACGACTGGGAACAGAGATAAAAACACGATTCTTCAAAATCatgcttgtttttgtaatttgTTGGCTGCCAAACCTGATCAACGAGAGCCTTCTGTTTTATCTGGAGATGCAGGCCGACATCAAAGCCAGTCACCTCAAGAATGTGAGAAACGCTGCCCTGATCACATGGTTTATAATGACCTCCGACATCACAGTGACATCAGTGTACCGCGTGCGTCTCGTCTCTCCCCAGGGGATCCTCAACCCCATGCAGGGCTTCCTCAACACCCTGGCGTTCCATGGCTGGACCGGCTTCGACGTCGACCTGAGCGTCCAGCGCCGCCGGGAGATCCCCTGGGACTCAGCCTCCACGTCGGCCGCAGCGGCGGGTGCCTACAACCCCACCGTGGGCTCCTCGCTCAACTACCAGGGCTACGTGCAGGAGGCCAAGAAGGGCATGAACGGCAACGGGCAGCAGGCCTCCGACGCCATCAGCGTCCTCTCCGAAGGTTCAGAGTCTAGTACAGTTGAAATCCACATTTCGAGTGAGCTCCGTGACTTTGAGGGCATAGATGCTGATGGGGAATCGATGGAAAACTCTGAAAAGCATTAG

Function

GO: NA

KEGG:

id description
K08470 OA1, GPR143; ocular albinism type 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014208 True 1308 mRNA 0.56 9 4568669 4583209

Neighbor

gene id symbol gene type direction distance location
AMCG00014209 NA coding upstream 20262 4520802 ~ 4548407 (+)
AMCG00014207 LOC108443135,LOC102799111 coding upstream 69713 4460775 ~ 4498956 (+)
AMCG00014202 NA coding upstream 251990 4298341 ~ 4316679 (+)
AMCG00014201 rab9a,LOC106581920 coding upstream 277120 4290944 ~ 4291549 (+)
AMCG00014200 NA coding upstream 324647 4242810 ~ 4244022 (+)
AMCG00014213 anos1,LOC104963477 coding downstream 140445 4723654 ~ 4746002 (+)
AMCG00014214 NA coding downstream 254514 4837723 ~ 4851433 (+)
AMCG00014216 hdd1a coding downstream 368121 4951330 ~ 4958249 (+)
AMCG00014217 NA coding downstream 478623 5061832 ~ 5062272 (+)
AMCG00014218 NA coding downstream 496300 5079509 ~ 5079783 (+)
G68422 NA non-coding upstream 18667 4500864 ~ 4550002 (+)
G68376 trappc2 non-coding upstream 272850 4294817 ~ 4295819 (+)
G68374 NA non-coding upstream 275143 4293326 ~ 4293526 (+)
G68317 NA non-coding upstream 484705 4083763 ~ 4083964 (+)
G68292 NA non-coding upstream 613404 3954366 ~ 3955265 (+)
G68434 NA non-coding downstream 1265 4584474 ~ 4588428 (+)
G68473 NA non-coding downstream 64501 4647710 ~ 4648213 (+)
G68497 NA non-coding downstream 202117 4785326 ~ 4785601 (+)
G68509 NA non-coding downstream 273820 4857029 ~ 4857230 (+)
G68538 NA non-coding downstream 868079 5451288 ~ 5451521 (+)
AMCG00014196 NA other upstream 436951 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 1858340 2706840 ~ 2710329 (+)
G67896 NA other upstream 2438524 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 2665982 1900220 ~ 1902687 (+)
G67801 NA other upstream 2687628 1879091 ~ 1881041 (+)
G68475 NA other downstream 65991 4649200 ~ 4651964 (+)
G68830 NA other downstream 2762986 7346195 ~ 7349467 (+)
G68848 NA other downstream 2830431 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 2881294 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 5419849 10003058 ~ 10008648 (+)

Expression


Co-expression Network