AMCG00014209


Basic Information

Item Value
gene id AMCG00014209
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4520802 ~ 4548407 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014209
GGAGCGTAAAACAGCCTGTAATCCTATACACACCGGAGCCAAAATGGCGAACATTAGAACTCCAGTTTCATTAGACGTCTTACTGCATAAACTTTAGCTCTGCCCTCCTAGGCTACTGTCACTTTGAACATGGCGGATGCTGGGACTAGGGAGTCCGATCTGGAAATCGCGAAGAAAGTTGAAGAGACGAGACAGAGATTCAAAACTGAACACGTCCAAGACTCGACAGATAAGTACGATGCCAGAGACGTGGAGAGGCTGCAGAAAGATGACCTTCTGGCTGAAAGTTACCTGACATGGCGACACTACATTGTGGATGACGCTCTAAAGATGATTGACGAGAGCTTTCAGTGGAGAAAAGAGTTTCAGGTCAATGaTCTCACCGAGAGCAGCATTCCCAAGTGGATGTTTGAAACCGGTGCCGTCTATCTGCATGGCTACGACAAGGAGGGCAACAAATTATTTTGGTTTAAGGTGAAGCTTCATGTAAAAGATGCCAAATCTGTCATCGACAAGAAGAAATACGTTGCTTTCTGGCTCGAGCGCTATGCGAAGAGGGAACCTGGGATGCCTCTGACGGTGGTGTTTGACATGTCCGAATCGGGGTTAAGCAATATTGATATGGACTTTGTGAAATACATCATCAACTGCTTCAAAGTCTATTATCCTAAGTTCCTTTCTAAAATGATCATGTACGAGATGCCGTGGATTATGAATGCTGCCTGGAAGATTGTGAAGACGTGGCTCGGCCCAGAGGCGATAAACATGCTCAAATTCGTTTCCAAGAACGAAGTGCAAGAATTTATTGGTGCCGAATACCTTCCGACGTACATGGGAGGGACGGACACGTTTAAATACATCTACCCTCCGCTGCCAGACGATGACTTCCAGTCTCCCATCTGTGAAAACGGCCCCATCGCCAGTGAGGATGAAAACGAAGGCAAAGACGGAGAATCTGAAACCAAATCTGAGACCAATTCCCTGGCAGACCCTACACAAAAGCCAAAGAAGGTGAACTTTCCAGCAGACGCTCTGAAATCGGACGAATACGACAAGGGGGATGCGACTGATAAACCCAGAGCGGCCAGGAAACCTTTGACGACGTTTAAGGGGCCCTTGCTTTACATAAGCCCAGCTGAGGAGCTTTGCTTTGGATCCAAAGACAACGAAAAGAAATGCCTGATTATTCTAAGCAACGTGACCAAAAATCAAGTGGCGTTTAAGGTGAGAACCACGGCCCCCGAAAAGTACCGGGTCAAACCGAGCAACACCAGCTGTGAGCCCGGTGCTACCGTCGACATTATTGTGTCTCTTCATGGAGGGTTCCTAGCCTCCCCCCAGGATCGGTTCCTGATCATGGCAGCTGAAATGGACCTGACCACGACGGCTGGACCGCAGGAGCTCGTGCAGTTCTGGAAAGAAgttccaaaacagaaaataatggaacACAGATTACGGTGTTATGTTATTGAAAGCTGTAAGCCCACCAGTTTGTTTGGTGAAAGCCCCCTCAACAATGTGAAGAACAGCCAGGAAGACTTGCATTCCAAACTCCTCAGAGTCATGGCCAGCAGCAAGAGACTCGAAGAGCAGGTCGACCAGTGCCTGTGGTTTCAGAAGATGTTGATGGGTCTGGTGTCGCTCTTGATGGCCATCACGTGTTCCATGCTGTATCTCCTGTACATGGACGGCAGTCGCTTCTAAGATGGCCGCCTGCCTGGATCGGAGATTTGCCCACGAGCGGCTGCGTGGCCAGTCGGCTGATACAAAGGGCCCTTACACAATGTAGAGACCAAATAATGAAGctaattgtatgtgtgtggagGCCTGAACTGAGCCTTGAGGTCTGTAAGTCTTAAATATGAACGGGAATGAAGAACTTGCCATGTGCTGAACGGATCGAAGCTTTCTGCCACCGCTGAGGTGCATTCGAAGAGTTAAATGATACTCAGGACTTCAATGAACCATGTTTTTCTAGTATTCTTCATGGAATTCCTTCCAGCAAAGGTCCACTGTGAggttttgtgctgtttttgtttatttatcaacCTGATGtatgtgggtttttttttgttcaggcTTACTTTGGTACCATTTTTAAAAGGCCGTTACTGTTTGTGTGTCcgatgtttgttttgtttgtgtatctgtttattttccGGCATTAAAATAAACCCACTGTTGTTGTATTAGTAGTTTAGAAAACTCACCACAGTACGTCCGCTGTCGTTGTCACTGCCTGCTCCAGAGAaatcaacaatatttattttcatccaaCCACAATAAACTTGAATGCAAGAAATATTGTATCTTAATAATGATTTACAGATTCGAACAGGACGGTTTATGGTCTTGGAGATATTTATGACAGGAAATTGTGCCTGTCTTTTGCTCAGATCAGTGGAATAATAATCCTGTGACCGATTATCTAATGTTACgtgtacaaatatgtaaataaatacatctgcagAGTGGAGGTAATGAGGGGGGAATGACAAGCTCAGCCTTTGACCTCTCTCTGATGGAATTAAAAATTATCTTAAATTGGCTGATTTCTATTTGGGATTGTGATTTCTAAACCCTTCGCAGCTGGGTGTTGTGTTATATAGTCCGGCCCTTAATTGATTCAtatttagtataattattaacaCCAGGAAATGTTTTTGGCGTTAACGATTGGCTGTCTACGTGAAATGAAGGAAAGGATAATTCCTCAAACCGTCCTCAAAACGCAAACCGTATGGCGTCGACTTCAGGAGCTTTTCATTGCTGTCTGGGCTGTGTTTTGGAGCTTTGGGACATCATTCTGCCTGGAACACATAAGCTGTGAGAAGACGCTGCCACCTGCCACCTCCTTACAGAGACATCCGCCTGGAAGGCTGAGGAAAGGTACTGGACTCCGCATGGTGCCCTGGGCGGGAAGGTGGAACACCATTGGGAGAGAGGCGTGTTCTTCGGCTGACATGGGCACCAGCAAGGAGGCATTTGCTTTGGTAATATTTGGACCAAGTTGACTTATTGTTGAGTCCACACCTAGTAGGAAAACTCCTCTGCGTGCAACTCTTGAAAGTAATTGACGAATACTCATTTCCACGACcagttaaatataatatttgtttggtTAATCGTGAACACAGCAGTATAGTTTTCGATTCTTGAAAAAGTATGAGtttgcttacacacacacacacacacttctctcaGGTACTCTCTTGTTCAGATTAGTCCAATTCCAACAATGTAATTCAGAGCTTCTACTGCCGTATTTCTTTACATTGCTTGTGCTTCTGTTTCCTCTTAGACTTACTGTTATCCTGTGTATACTGTAAATACCGAACAGCATTCATGATGAACTGCCTTCTGTTGaaatctttatatataatttaaatgtttaatgatgaatatttttatttgatgctTGTACTTCTCTGTTTATTATTAGGCAGACAAAAGCTTCCCCCTTGGCGATCGTTCGagcttgttgtgtttgtatatttcacACATATCTGCCAGGCTGAAGGCTTCTAATTTAAGAGAGTCTGTAGACGAGTGTGCTTGGTGGCTTGTTCTGTTTATTGTAATCACTCGGAGCGTGCAACTAAAAATACCAGCCCAATTACCACTGGGATGTAAAAGGATGATGCAGGAGAAGACTCAGAGACTGCAGTTGCAAGAcaggaaatatttaaacagtttgAGTAGCCCAGCCGTGTAAAAACCTGTTTCGATGGACGTGTCAGTGTGGGCCGCTGTAGATAATCCTGTTTTCCTGGtatgtacatttaattgtgCAGCCTTGCATTTCCGTTTGCTTTTTACAGACACTTCAGTTTTGTAAGTTTACTAgaagaaatgtattcattcagtGACATTCAAATACACTAGACATGACTCTCGAGACATTGTGTGATCGATTGATAACAAGCTTGTGGCAATATTTCGGTGGggttgatgtatttgtttgagcATAGGTGGTTTTCCTCTATGAGAAGGATGTGGGCTTCTGCAGGTTTGAATTGGCATGCTGGTTATAAATCAGCACTGTCCACAAACTTGAAAGTGCACTTTTAACTCCTGTCATCTTTCTCCTCAGAGACCTCCCTTTGTATTCAGCTGGTGAGGGCACACGTAATGAAGTCTGCCCTTTCAAGGTAGTGTTAACAGGGTGATGGTCCTAAAACAGAAGTGCTCAGACTTGACTGTGCTTCCATCcttttcataagaacataagaaagtgttaAATCAAGAgaaggccattcaccccatcgtgctcgtttggtgtccattaataactgagtg

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014209 True 4299 mRNA 0.44 15 4520802 4548407

Neighbor

gene id symbol gene type direction distance location
AMCG00014207 LOC108443135,LOC102799111 coding upstream 21846 4460775 ~ 4498956 (+)
AMCG00014202 NA coding upstream 204123 4298341 ~ 4316679 (+)
AMCG00014201 rab9a,LOC106581920 coding upstream 229253 4290944 ~ 4291549 (+)
AMCG00014200 NA coding upstream 276780 4242810 ~ 4244022 (+)
AMCG00014198 NA coding upstream 293159 4223544 ~ 4227643 (+)
AMCG00014208 NA coding downstream 20262 4568669 ~ 4583209 (+)
AMCG00014213 anos1,LOC104963477 coding downstream 175247 4723654 ~ 4746002 (+)
AMCG00014214 NA coding downstream 289316 4837723 ~ 4851433 (+)
AMCG00014216 hdd1a coding downstream 402923 4951330 ~ 4958249 (+)
AMCG00014217 NA coding downstream 513425 5061832 ~ 5062272 (+)
G68376 trappc2 non-coding upstream 224983 4294817 ~ 4295819 (+)
G68374 NA non-coding upstream 227276 4293326 ~ 4293526 (+)
G68317 NA non-coding upstream 436838 4083763 ~ 4083964 (+)
G68292 NA non-coding upstream 565537 3954366 ~ 3955265 (+)
G68189 NA non-coding upstream 1037153 3410978 ~ 3483649 (+)
G68434 NA non-coding downstream 36067 4584474 ~ 4588428 (+)
G68473 NA non-coding downstream 99303 4647710 ~ 4648213 (+)
G68497 NA non-coding downstream 236919 4785326 ~ 4785601 (+)
G68509 NA non-coding downstream 308622 4857029 ~ 4857230 (+)
G68538 NA non-coding downstream 902881 5451288 ~ 5451521 (+)
AMCG00014196 NA other upstream 389084 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 1810473 2706840 ~ 2710329 (+)
G67896 NA other upstream 2390657 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 2618115 1900220 ~ 1902687 (+)
G67801 NA other upstream 2639761 1879091 ~ 1881041 (+)
G68475 NA other downstream 100793 4649200 ~ 4651964 (+)
G68830 NA other downstream 2797788 7346195 ~ 7349467 (+)
G68848 NA other downstream 2865233 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 2916096 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 5454651 10003058 ~ 10008648 (+)

Expression


Co-expression Network