Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00014216 |
| gene name | hdd1a |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 4951330 ~ 4958249 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| Haloacid dehalogenase-like hydrolase domain-containing protein 1A |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0016787 | hydrolase activity | molecular_function |
| id | description |
|---|---|
| K17623 | PUDP, HDHD1; pseudouridine 5'-phosphatase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00014216 | True | 507 | mRNA | 0.52 | 3 | 4951330 | 4958249 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00014214 | NA | coding | upstream | 99897 | 4837723 ~ 4851433 (+) |
| AMCG00014213 | anos1,LOC104963477 | coding | upstream | 205328 | 4723654 ~ 4746002 (+) |
| AMCG00014208 | NA | coding | upstream | 368121 | 4568669 ~ 4583209 (+) |
| AMCG00014209 | NA | coding | upstream | 402923 | 4520802 ~ 4548407 (+) |
| AMCG00014207 | LOC108443135,LOC102799111 | coding | upstream | 452374 | 4460775 ~ 4498956 (+) |
| AMCG00014217 | NA | coding | downstream | 103583 | 5061832 ~ 5062272 (+) |
| AMCG00014218 | NA | coding | downstream | 121260 | 5079509 ~ 5079783 (+) |
| AMCG00014220 | nlgn4,nlgn4x | coding | downstream | 156401 | 5114650 ~ 5118152 (+) |
| AMCG00014219 | NA | coding | downstream | 170922 | 5129171 ~ 5130645 (+) |
| AMCG00014221 | prkx | coding | downstream | 549775 | 5508024 ~ 5550098 (+) |
| G68509 | NA | non-coding | upstream | 94100 | 4857029 ~ 4857230 (+) |
| G68497 | NA | non-coding | upstream | 165729 | 4785326 ~ 4785601 (+) |
| G68473 | NA | non-coding | upstream | 303117 | 4647710 ~ 4648213 (+) |
| G68434 | NA | non-coding | upstream | 362902 | 4584474 ~ 4588428 (+) |
| G68422 | NA | non-coding | upstream | 401328 | 4500864 ~ 4550002 (+) |
| G68538 | NA | non-coding | downstream | 493039 | 5451288 ~ 5451521 (+) |
| G68559 | NA | non-coding | downstream | 699001 | 5657250 ~ 5704009 (+) |
| G68589 | NA | non-coding | downstream | 821129 | 5779378 ~ 5782386 (+) |
| G68623 | NA | non-coding | downstream | 938821 | 5897070 ~ 5956185 (+) |
| G68635 | NA | non-coding | downstream | 1054433 | 6012682 ~ 6013059 (+) |
| G68475 | NA | other | upstream | 299366 | 4649200 ~ 4651964 (+) |
| AMCG00014196 | NA | other | upstream | 819612 | 4127476 ~ 4131718 (+) |
| AMCG00014146 | NA | other | upstream | 2241001 | 2706840 ~ 2710329 (+) |
| G67896 | NA | other | upstream | 2821185 | 2126872 ~ 2130145 (+) |
| AMCG00014111 | NA | other | upstream | 3048643 | 1900220 ~ 1902687 (+) |
| G68830 | NA | other | downstream | 2387946 | 7346195 ~ 7349467 (+) |
| G68848 | NA | other | downstream | 2455391 | 7413640 ~ 7416594 (+) |
| AMCG00014272 | tbc1d23 | other | downstream | 2506254 | 7464503 ~ 7482560 (+) |
| G69406 | tgfbrap1,LOC102780916 | other | downstream | 5044809 | 10003058 ~ 10008648 (+) |
| AMCG00014345 | NA | other | downstream | 5189730 | 10147979 ~ 10151913 (+) |
