AMCG00014229 (sept10,LOC105911973,LOC107697805,LOC108430022,LOC103039444)


Basic Information

Item Value
gene id AMCG00014229
gene name sept10,LOC105911973,LOC107697805,LOC108430022,LOC103039444
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5866905 ~ 5879257 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014229
GTGGAAATGCCCACATTCCTGCCCCGACTGCCCCAGCCGGATTTTTCAGCTGGAAACTATTGGGAAAAAAGACTGGGCTGGTCTGTTCAGACACTTTTTCTCCTAGTTAAGAAAgtactaataataacacatttttatccCTAAAAATGGCCTCGTCTGATGTAGCCCGACAGCTGCAGGATAAAAATGCCCGTCCACTCTCCCTGTCTGGCCATGTTGGGTTCGACAGCTTGCCAGATCAACTGGTGAACAAATCCACGAGCCAGGGCTTCTGCTTCAACATCCTGTGCATCGGTGAGACGGGAATTGGCAAGTCGACTCTCATGGACACGCTGTTCAACACCAACTTTGAGAACTTCGAGTCCTCTCACTTCGAGCCCAAGGTGAAGCTGAGGGCCCAGACCTACGACCTGCAGGAGAGCAACGTCCGGCTGAAGCTCACCATCGTCAACACGGTGGGCTTCGGGGATCAGATGAACAAACAAGAAAGGCAAGGCTACCAGCACGTGGTGGACTACATCGACACGCAGTTCGAGACATACCTGCAGGAGGAGCTGAAGATCAAACGCTCGCTGCACAACTACCACGACTCGCGCATCCACGCCTGCCTGTACTTCATCGCGCCGTCGGGACACTCGCTCAAGTCCCTGGACCTGGTCACCATGAAGAAGCTCGACAGCAAGGTCAATATCATCCCGGTCATCGCCAAGGCCGACACCATCTCCAAGAGCGAGCTGCACAAATTCAAGATCAAGATCATGAGCGAGCTGGTCAGCAACGGCGTCCAGATCTACCAGTTCCCCATCGATGACGAGACAGTGGCCAAGATCAACACGGCGATGAACGGTCACCTGCCCTTCGCTGTCGTTGGCAGCACAGAGGAGGTGAAGATCGGAAACAAAATGGTGAAAGCCCGACAGTACCCTTGGGGCGTTGTGCAAGTGGAGAACGAGAACCACTGCGACTTCGTGAAGCTGAGAGAGATGCTGATCTGCGTGAACATGGAGGACCTGCGGGAGCAGACGCACACGCGCCACTACGAGCTGTACCGCCGCTGCAAGCTGGAGGAGATGGGCTTCAAGGACACGGACCCCGAGAGCAAGCCCGTCAGCCTGCAGCAGACCTACGAGACGAAGCGGCAGGAGTTCCTGGGGGACCtgcagaggagggaggaggagatgagGCAGATGTTCGTGCAGCGAGTGAAGGAAAAGGAGACGGAGCtgaaggaggcagagagagagCTGCAGGGCAAGTTTGAGCACCTGAAACGGGTGCACCAGGAGGAGAGGATGAAGctggaggagaagaggaagcTGCTGGAGGACGAGATCAACACGTTCAGCAAGAGAAAAGCCGCCACAGAGCTGCTCCAGGCGCAGGCCTTCAACACGTCGGCCAACGTGAGCATCAAGAAAGACAAAGACCGTAAAAAGTAAGCCCTGGTTTCTTTCAGTAGTTATGTATTCGTTCAGCTTCTTCTGAAGGAGTGttttttgtccttttgttttattaagcaaaactaaaagatacattttgcccgttgagtctgtctgtctctctcgcgCGCGCgcgctgtctgtctgtctgtctttgatcTCGCCGGGACCGAGAACAAGCAGGAGCCTCCGATTCACATGATGAGAGCAGGGCGGGGAGAGAGCTGTGATCGGACAGGGGTCAAATCCTCATTTTAGAGTGCATCTAGATCGGTGGCACGATGAATGAATGATCTCGGCTCTGAAAAGTCTCTTTAATTCAAAGTCATTTTATGAACAATTGGTTGACATAATTCAACATACGTTTATTTACTGACTATTCTGCTCTCTTCCAGCTCTGGGTTCATGTGAAGACGCTGTGCTGAAGACGACTGCCGTCTGTTAGACGTAGActgtaataaatacagaatattatCTCTATCGCTCTTCCCATCATTACTAGTCTCACAgtgttgtgtattttaacatcTGCTGCCTGCTGGGCACACGTGTGTCATGCTGTGTATATATTCAtgtgtgtgctgttgttgtgttATTAATGTCGTTGTCCATTGCTTCTCTTAAACCACTGCCTCACGGGAGCCGTCTCCCCCTGTGTGCGTTCGCTCTGACCTGACGTCCGCTCTCTGTGAGGGTCCGCTGCTTTCGGGACCCTCCGCTCCGTCTCAGTCGTGCGTGTAAAGGACTGGATTCGACTCGagcatttaaatacagaagtgCCAGTAGATTTAAACGTCTTGGGTCGATGCTTGAGGACACATCCTAAACCCCAAGCCCCTTTGACACGCGTAGCGGGTCCAAATGAAGTTCTGTCCCCACGATGCCTTACTCCTCCAGTCCAGTCCATCCCTCCATCCGTTCTGTCGCTGGCGTCAATAAAAAAAGGCGCCAAATCTTTCCAAACCTCGTCTTGCCTGGGCCAATCTTTAAGCATGAGACCAGAACCCCAATGGACagtttggtttttttttgtttttaattcagatatCATGGTACAACAGGTCAATGCAAAtaccttttcttattttgtgtgtttgtaatccAAAGTTTGGCTGTACAGAAGTTGCCGCTGCATTTCAAACAGTTTCAACTTCTTGTTTCCAAAACTGATCTAAAAACGCTCTTTTCCTAGTGAATAGACTATGCAAACATGGGTCTTTTAGCAATACAGCCCACACTTGTCACCGATTGCCTTAAAAACCATTCCGTGTGCCTTCTGCCTCCTTTACACGGAGActattgaaatgaaaagggaGAAATTTTGTACTAGATGCTGTTTACATCGAACTTGTTCCATGTGTTGGTACTTGTTGGCCGAGCGTCACCGCAGTATCGACAGTGTCACCGCCTGCCCTGAAGGATGAGATTTCACAAAGAATCCACAGGATGACTCAGAAAACATTATGCGtaacttttatatataaacttgtATTTAAGTATACAGTGTTATTGAGGGACTAAATATTCATTGAATATTTTTTAGCAACAATAAAAAATTT

Function

symbol description
sept10 Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cellular protein localization and cytoskeleton-dependent cytokinesis. Predicted to be part of septin complex. Predicted to be active in cell division site; microtubule cytoskeleton; and septin ring. Human ortholog(s) of this gene implicated in Parkinson's disease. Orthologous to several human genes including SEPTIN10 (septin 10).

NR:

description
PREDICTED: septin-11-like isoform X1

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16940 SEPT10; septin 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014229 True 2998 mRNA 0.49 9 5866905 5879257

Neighbor

gene id symbol gene type direction distance location
AMCG00014224 NA coding upstream 92144 5755529 ~ 5774761 (+)
AMCG00014225 NA coding upstream 126984 5721897 ~ 5739921 (+)
AMCG00014223 NA coding upstream 223416 5607773 ~ 5643489 (+)
AMCG00014222 NA coding upstream 259151 5595455 ~ 5607754 (+)
AMCG00014221 prkx coding upstream 316807 5508024 ~ 5550098 (+)
AMCG00014237 NA coding downstream 154180 6033437 ~ 6054435 (+)
AMCG00014243 NA coding downstream 355546 6234803 ~ 6239921 (+)
AMCG00014253 NA coding downstream 852367 6731624 ~ 6732517 (+)
AMCG00014259 NA coding downstream 1160497 7039754 ~ 7046875 (+)
AMCG00014260 LOC107688668 coding downstream 1171079 7050336 ~ 7054907 (+)
G68589 NA non-coding upstream 84519 5779378 ~ 5782386 (+)
G68559 NA non-coding upstream 162896 5657250 ~ 5704009 (+)
G68538 NA non-coding upstream 415384 5451288 ~ 5451521 (+)
G68509 NA non-coding upstream 1009675 4857029 ~ 4857230 (+)
G68497 NA non-coding upstream 1081304 4785326 ~ 4785601 (+)
G68623 NA non-coding downstream 17813 5897070 ~ 5956185 (+)
G68635 NA non-coding downstream 133425 6012682 ~ 6013059 (+)
G68637 NA non-coding downstream 175278 6054535 ~ 6056347 (+)
G68649 NA non-coding downstream 194460 6073717 ~ 6110306 (+)
G68665 NA non-coding downstream 233399 6112656 ~ 6114964 (+)
G68475 NA other upstream 1214941 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 1735187 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 3156576 2706840 ~ 2710329 (+)
G67896 NA other upstream 3736760 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 3964218 1900220 ~ 1902687 (+)
G68830 NA other downstream 1466938 7346195 ~ 7349467 (+)
G68848 NA other downstream 1534383 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 1585246 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 4123801 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 4268722 10147979 ~ 10151913 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location