AMCG00014238 (sh3rf3,LOC106582226)


Basic Information

Item Value
gene id AMCG00014238
gene name sh3rf3,LOC106582226
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6003637 ~ 6004228 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014238
ATGGACGAATCGTCGCTGTTGGATTTACTCGAGTGCTCGGTGTGCCTGGAGCGGCTGGACACCACCGCCAAGGTCCTGCCCTGCCAGCACACCTTCTGCCGCCGCTGCCTGGAGAACATCGTGAGCTCCCGCAGCGAGCTGCGCTGCCCGGAGTGCCGGATCCTGGTGGACTGCGGCGTGGACGACCTGCCGGCCAACATCCTCCTGGTGCGGCTGCTGGACGGGATTAAGCAGCGGCCGCGGAACGGGGGCAGACCGTCGCTCACAGGGGCTTCCCTGGGATGCGCCGCCGGGGTCTCAGCCTCCCCCCCGGGGACGGCCGTGCGGGAGCTGCCCGCTGCCACCCGGAGCTCCCCGGTGAAGcctatcGACTCTGATGTGCGGGTCCGTCATGTGCGCTGCTGA

Function

symbol description
sh3rf3 Enables ubiquitin protein ligase activity. Involved in positive regulation of JNK cascade and protein autoubiquitination.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: SH3 domain-containing RING finger protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014238 True 405 mRNA 0.69 2 6003637 6004228

Neighbor

gene id symbol gene type direction distance location
AMCG00014235 NA coding downstream 92237 5908142 ~ 5911400 (-)
AMCG00014234 NA coding downstream 97384 5896567 ~ 5906253 (-)
AMCG00014236 NA coding downstream 109691 5893211 ~ 5893946 (-)
AMCG00014233 LOC107697803 coding downstream 112386 5886471 ~ 5891251 (-)
AMCG00014232 NA coding downstream 137113 5864356 ~ 5866524 (-)
AMCG00014240 NA coding upstream 79159 6083387 ~ 6104883 (-)
AMCG00014242 LOC106582183,LOC103353988 coding upstream 105131 6109359 ~ 6124346 (-)
AMCG00014239 NA coding upstream 141380 6145608 ~ 6163757 (-)
AMCG00014244 LOC106582186,LOC106586545,LOC108440498,LOC108437783 coding upstream 201700 6205928 ~ 6212795 (-)
AMCG00014246 NA coding upstream 216769 6220997 ~ 6222712 (-)
G68595 NA non-coding downstream 177708 5825504 ~ 5825929 (-)
G68590 NA non-coding downstream 221245 5779485 ~ 5782392 (-)
G68581 NA non-coding downstream 293557 5709818 ~ 5710080 (-)
G68572 NA non-coding downstream 299710 5657305 ~ 5703927 (-)
G68547 NA non-coding downstream 415645 5587499 ~ 5587992 (-)
G68680 edar,LOC107697794,LOC107757718 non-coding upstream 49883 6054111 ~ 6056331 (-)
G68722 NA non-coding upstream 530252 6534480 ~ 6534701 (-)
G68724 NA non-coding upstream 675797 6680025 ~ 6680288 (-)
G68757 NA non-coding upstream 986375 6990603 ~ 6990867 (-)
G68767 NA non-coding upstream 1039897 7044125 ~ 7045812 (-)
AMCG00014228 NA other downstream 325138 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 2608883 3385757 ~ 3394754 (-)
G68088 NA other downstream 3174493 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 3350390 2641059 ~ 2653247 (-)
AMCG00014134 NA other downstream 3460940 2531954 ~ 2542697 (-)
AMCG00014241 NA other upstream 55261 6059489 ~ 6108358 (-)
AMCG00014271 NA other upstream 1373860 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 1397924 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 1409501 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 2130675 8134903 ~ 8139126 (-)

Expression


Co-expression Network