AMCG00014241


Basic Information

Item Value
gene id AMCG00014241
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6059489 ~ 6108358 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014241
ATGTGTATCGATCCCAGAAGCCTTTGCGCACGGTGTGGCGGAAGTGGGTCCCTGGGCGGAAACGCCGCGCACGTCACGGCAGGAGCTCCGGATTCAAACGGCTGCGCGCTGTCTGTGCCGGTAGACAGTCCTCGGACAGCGGCCCGGTGTTCATCGCGCACGGGGCTCGCTGCGGAGCTCACGATGAGTTTTGCAGAGGCGGCCGTGGATCTGGACATCACGGTGCAGAGGCTGAAGAAGAAGTACCTGGACCGCGGCCGGGTGGGCTTGTTCACTCCGTCTCACTGCAGTAGCGCGTCCAGTTCATTCCCTGCGTACGTCTCGCCAGAGCCTCGGATGCTGACCTCGGTGGAGAAGAAGTCTCCCGAGTCCGGCCTCAGCTACAGCGAGAGGAGACAGTATCGCAGAGCAATCCGGGAGCTTTACGAGACAGTCAGCCGCGGCTCGGACAGGCAGGACAGGACAGAGCAGTGCATGTTTAATGGCAGCTCGGCGGTCAGCGAGGAGGAGCTCAGTGGAGAGGAGGCTGTGGATGCGCTGGACACCAACTCACAGCTCTACACCGAGACGGACGTGACCCTGCCCTCGAACCTGGCGCGGGCCTCGGGCTCCCACGTGACCGACCCCCATGCGGACCTGAGGGCCGCGTGCCCCCGAGCAGAGACCCGGGAGAAGCGCTGCTCTCTGCCTCCCGAGATGGGCCAGGTGTACCGCGAGATGCTGCTCATCTACGACAAGCTGCAGCAACATCAGCAGGAAGTCAGACGACTCCAGGAGagcctgagagacagagacaaggaGAATAAGAGGCTGACGTCCTCCTTCGAGACCATGAAGGCCTTCAACGACACTGTGAAGAAGCAGCTTCATGATGTCAGCGAGCAGAACAAAAGGCTGGAGAAGCAGGCGAGGAGCGTACAGGCCCGTCTGGAGAACTTGCAGCGGAAGCACGAGCTCTTGGCGGTGCAGAGGGGGCGAGAGAACATCCCCCCCGGCGGCCAGGACGTGAAGCGGGCGAGACGAGACCAGGCGGCCGCCGGGGCGCGACCAGCCAAGCCGCCCCCGAGCCCCGCTGTGTATGAGGCGCTGGCCGCCCTGCTGGACTGGGTCGTGGATCTGCAGCTCCGCCATCTACCCCCCCGAGACGGAGGAGACGACAGCCTGGCGCAGGAGAGGTGTTCAAAGCTGTTGCCGATGCTGACCGAGCAGCTGCAGTCGGGTCCGGCCGTGAGCGCCAGTCTCCACGTGCCGCTGGTCAGATTCATCTACTGGGCTTTGAGGCAGCTGGAAAACACCCCCCAGCACAACACCCTGACCTCCACCATGAGACGGCTGGGCGAGGAGGCCTACCGGGGGGCGGCTCCGCGCAGAGGACGAGGCGGCTCCCCCGACCGCGGCCACGAGGGCAAGCCGGCGACCGCGGCCTTCTTCAGAAGCCCCAGCCTCCACGTGAGGTTCCTGTCCACCCTCATCGTCCTCAAAACAGTCTCTCAAGGTGAGGCAACATGGCCGCAATGACCCGACGGGCCCGATCTCTCCTGCCAATGTGTTCTCCTCGTCCATCGATGCCAGCTGGACCGGCCGAGGAAACGCTACACCCTCTGTGATTGATCACTGTTGGCTCTCGTCTTGGGTGCAGCTCCCAGCCAGTCAGTCTTGTTTTAAGTAGACGGACGTCTCCAGGGTTTCTGGACGCCTTCCTGCAGAGCTGCAGCAGTGAGTCGTGTTTCCGGACCCTCTCCCTCCTGCTGCGCCAGCCCAGACTGGATGTCCCGCTGCTGGAGAAGATCAGCGTCCTCCTCCAGAAGCTCTCCAAGATCAAGAGGAACAAGCGGCTGTTCGAACTCTCGGGCATCCATCTCGCCGTGCAGGAGATGCACCGCACGGCCGACCCGGCGCACACCTTCCTCACCATCAACCTCAACTCCATCCTCTACAACCTGGGCCTGCTGAAGAGAGAGTCTAGGCCCCTCAGGTTTGCTGGCCCAGCATGTGAGCGTCTGGAGAAGCGTTCAGATGAGCTTTAATGTCTCAATTCGGTGATTTGCACCCCCGTGTGATCTGACTTCAGTTCTGGGAGGCCGGGAGTGATGTCTTCTTCTGGGTTTGGGATTTGTTAGTGGGGAAATGTAATCCTTTTTACTCATAGTAATTCTTTTTTACCGTAACTCTTTGGTTTCCCCCGTTTCCTCCCGGTAATCGACGTGTTTTCACAATGCCTTGTTCTTGCTTGATATTATGCAATGGATGTGGCTGACGCTTAATCAAAACAAGACCGTTCTGGAGACAGAGATGTTTTTGAAGTGACAGTGAACAGGCATTTAACTGCATCAAGATTTTCCCGTTTTCCATACTAATTCCCCCCCACCTACTAGTTTTGCTGCCTCTCATTGGTGtgcgtttgtttttttgtcgAGTGCCTCCCCGTTGCTCTCGTTTGACTGAGCTGAAGAACTGACTCTGCTCCCGTCCACCTCCGTGAGATGGTTTAAAGTCCCTAGTTTCATAAAGTCCTCCTTCTACTTCTCCCccaagtaataataaaaaaaaaactcctggGGACAGCTTTATCTGAcctagttaatttaaaaacaaagaccttCCACAGCttctgtcccaacttttttattaattattcagcaAAGCATCTCTCCTAAATCCCTTATCAATTAATTCACCGCGTGCCGAGAGCGTTTTCTGTGCTCGTTAGGGTTTGATGTATAACGGGACGTTTCTTTAATTGCAAGACAAGGCGGGTATGGTAATCAAGCGCTCGATCATAGGAAGCACCGGCGATGGTTAGAAATCCTTCACGTCCTGCTGCAGAGGAAGACGGTGATTTTAATTTGTCTCTGGTTTGATTTGATTGGCTGACTATTCTTTAATATCTCCGGTAGTAATCCAGTTAATAAATCAGAGTGAATGTAGGTATCAGTAGGCAGTTATACAGGCATTTTCCTTAACCTGACTGGCTGATGATCAAGATGATAGacagttaatttagttttaataccGATTTAATGGGTTTGTTTTGGAACGCTGTCCCTGTTCCAACATATGTGGTCTGTCTTGAACAATGTGTTTGGACAGGATCGCAGCTGTTGTGTGTCGGATGCCGAAATCAGCGCTGGGACCCTGGACTTAAGAGCCCGATAGCCATTAAATCTTGAGTTGTGTCCCGAGCTTTTTGGGATGTGGTGATGGTTTAATAGTCTCTCATTCTGAGCCGTCGCCAGTTCTGCTTGAGCTCTGAGTCCAAAGATATGTTGTGTTCTCAGACGTTAAGGGACTTCCCTTTAAATCTCCAGAGTTTTCCCAGTTTGGGCCAAAGCAACGTGGACAAGTATTggttttattaaagaaacaacaacaacagacttTTTCCTTTGTGCGATGGATTTGTTATTCTTTAGAGATCGGTTGCCTCATCCTGAGACATCTTAATGGATTGGTGCTGTAAATAACGGGTGATATATCAAATCTCATTGTTAAAACTCatcaatttatgtttttttttgcagttaaaGTCATTAGAGTTTGAGTGGGTCTCCCAGTCGTCCTTCAAgaccacacactcacacgtgTGCCGGACAATACAAACTCGCAGCAGATGAAGTATTTATTCTGGGTTCGGTTCGCTGCTCCTTCCCaggtctgtctctgtcctctcgGCTCTGCGGGAATCCCATCATGAGGTCTGGGTTTTGTGGCAGGGTATGTGCCCCCAATAAAGCTTTCCTCAAAGACCACGGCCCCGATTCACTTTCAGCCACTGGCAGTCAGTCCAATCTGTGTCAGCGCTTTACTGTCCAAACGATGAACATCTCTGTCAACAGGCCTAGATAGAGACTTGAGTGACATTTGCTGTCAGTGCCTGAGCTTTCTCTTCTCCATGAtctactctctctctgtcccctgtcccctgtcTCTCTTGTTATCTGATAAGCAGCCATGAAATCATGAAGTTGTGGGCTATACTGACACAGACACTTCGTGGGAGTGTGTTTTtaccagtttttgttttgcacattttattgcTCCCGAATGTCACTGTAAATAGTGTCGTGACTCTTCCTCATTAAATATCTCGTCAACAGCTATCAA
>TU85822
ATTCAGAACGATTAGATGAGTCTCTAATCTGGAAaatctcctctggtttgatttCACTGGGAAATGTAAAGCAGCAAATGATAAACACTTCGATATTTAAGGATTAtttaaggtgtgtgtgtgtgtgtgtgtgttttaaactaGACACTGAAATAAAGCTCATCCCCGCTCCTCTCTCACTGCGTCTCCAGGGTTTCTGGACGCCTTCCTGCAGAGCTGCAGCAGTGAGTCGTGTTTCCGGACCCTCTCCCTCCTGCTGCGCCAGCCCAGACTGGATGTCCCGCTGCTGGAGAAGATCAGCGTCCTCCTCCAGAAGCTCTCCAAGATCAAGAGGAACAAGCGGCTGTTCGAACTCTCGGGCATCCATCTCGCCGTGCAGGAGATGCACCGCACGGCCGACCCGGCGCACACCTTCCTCACCATCAACCTCAACTCCATCCTCTACAACCTGGGCCTGCTGAAGAGAGAGTCTAGGCCCCTCAGGTTTGCTGGCCCAGCATGTGAGCGTCTGGAGAAGCGTTCAGATGAGCTTTAATGTCTCAATTCGGTGATTTGCACCCCCGTGTGATCTGACTTCAGTTCTGGGAGGCCGGGAGTGATGTCTTCTTCTGGGTTTGGGATTTGTTAGTGGGGAAATGTAATCCTTTTTACTCATAGTAATTCTTTTTTACCGTAACTCTTTGGTTTCCCCCGTTTCCTCCCGGTAATCGACGTGTTTTCACAATGCCTTGTTCTTGCTTGATATTATGCAATGGATGTGGCTGACGCTTAATCAAAACAAGACCGTTCTGGAGACAGAGATGTTTTTGAAGTGACAGTGAACAGGCATTTAACTGCATCAAGATTTTCCCGTTTTCCATACTAATTCCCCCCCACCTACTAGTTTTGCTGCCTCTCATTGGTGtgcgtttgtttttttgtcgAGTGCCTCCCCGTTGCTCTCGTTTGACTGAGCTGAAGAACTGACTCTGCTCCCGTCCACCTCCGTGAGATGGTTTAAAGTCCCTAGTTTCATAAAGTCCTCCTTCTACTTCTCCCccaagtaataataaaaaaaaaactcctggGGACAGCTTTATCTGAcctagttaatttaaaaacaaagaccttCCACAGCttctgtcccaacttttttattaattattcagcaAAGCATCTCTCCTAAATCCCTTATCAATTAATTCACCGCGTGCCGAGAGCGTTTTCTGTGCTCGTTAGGGTTTGATGTATAACGGGACGTTTCTTTAATTGCAAGACAAGGCGGGTATGGTAATCAAGCGCTCGATCATAGGAAGCACCGGCGATGGTTAGAAATCCTTCACGTCCTGCTGCAGAGGAAGACGGTGATTTTAATTTGTCTCTGGTTTGATTTGATTGGCTGACTATTCTTTAATATCTCCGGTAGTAATCCAGTTAATAAATCAGAGTGAATGTAGGTATCAGTAGGCAGTTATACAGGCATTTTCCTTAACCTGACTGGCTGATGATCAAGATGATAGacagttaatttagttttaataccGATTTAATGGGTTTGTTTTGGAACGCTGTCCCTGTTCCAACATATGTGGTCTGTCTTGAACAATGTGTTTGGACAGGATCGCAGCTGTTGTGTGTCGGATGCCGAAATCAGCGCTGGGACCCTGGACTTAAGAGCCCGATAGCCATTAAATCTTGAGTTGTGTCCCGAGCTTTTTGGGATGTGGTGATGGTTTAATAGTCTCTCATTCTGAGCCGTCGCCAGTTCTGCTTGAGCTCTGAGTCCAAAGATATGTTGTGTTCTCAGACGTTAAGGGACTTCCCTTTAAATCTCCAGAGTTTTCCCAGTTTGGGCCAAAGCAACGTGGACAAGTATTggttttattaaagaaacaacaacaacagacttTTTCCTTTGTGCGATGGATTTGTTATTCTTTAGAGATCGGTTGCCTCATCCTGAGACATCTTAATGGATTGGTGCTGTAAATAACGGGTGATATATCAAATCTCATTGTTAAAACTCatcaatttatgtttttttttgcagttaaaGTCATTAGAGTTTGAGTGGGTCTCCCAGTCGTCCTTCAAgaccacacactcacacgtgTGCCGGACAATACAAACTCGCAGCAGATGAAGTATTTATTCTGGGTTCGGTTCGCTGCTCCTTCCCaggtctgtctctgtcctctcgGCTCTGCGGGAATCCCATCATGAGGTCTGGGTTTTGTGGCAGGGTATGTGCCCCCAATAAAGCTTTCCTCAAAGACCACGGCCCCGATTCACTTTCAGCCACTGGCAGTCAGTCCAATCTGTGTCAGCGCTTTACTGTCCAAACGATGAACATCTCTGTCAACAGGCCTAGATAGAGACTTGAGTGACATTTGCTGTCAGTGCCTGAGCTTTCTCTTCTCCATGAtctactctctctctgtcccctgtcccctgtcTCTCTTGTTATCTGATAAGCAGCCATGAAATCATGAAGTTGTGGGCTATACTGACACAGACACTTCGTGGGAGTGTGTTTTtaccagtttttgttttgcacattttattgcTCCCGAATGTCACTGTAAATAGTGTCGTGACTCTTCCTCATTAAATATCTCGTCAACAG
>TU85829
agagagagtgtgagagcgagtgtgtgtgtgtgtgtgtgagagtgagagagagagtgtgagagcgagtgtgtgtgtgtgtgtgtgtgtgagagagtgtgtgtgtgagagtgagatagagagtgagagagtgtgtgtgtatcgcAGAGATTTGTAACacccaaagaaaaataatggacTGGACGTCTGTCCTCTAAATATGACACATTATCTATTAGTGCCTCTTAAAGTAGACTGTTTCTATCTATATCTTTATAAACTGCTATTTTTCCTGCATGGTTTTATATCTGTTTATACCCTCTTTGTTTCTTGTGCCTTATCAGTTTTATATCTATTGCCTAGTGGCTATTAGCAATACTGTGTGAGCGCGGCCTGCTGTGTTTCGGCAGCCTGTGTTTTGGTGGTCAAAGTTATATTTGTACTTTAGCATTCGACAGAAACTGCCTTAGTAATGAATCCAAACCGTTAAACCCCCATTGATGTGGAGACATTCAAATCatacaaaatgtcaaatacaaattctcaggattttaagcctttttttctttttaaatagccAACATCAAGTATGGTTTACCTGTCATGGACTAAAGCTACACTTAATTATAATCATAAGTGTGTTTCTGTAGAAAACATCAAGAGAATTACCCATTAAGAGAGTTCGTAGTCTGGGTAAACATCAGGGGACGTAGGATAATGATGAAGACAAGAAGAGccaaaaaagaaatacacagtgACAATCACCAGTTTAGTTGAATGATTTCGGGAGCTGACAGTATTTAAACTGCCTGTTGTGTAGATTGAGTACAGGTACACACATCCCAGTGCCAGGATGAAAAATGTCAGCGTATTATGCAAAACAGTACAAACTTGTGTCTTATTGATGTCTCACTCATTTGTTATAGTCTAATCATTTGCTCGTGGTTTATTTTCACTGCCAGCTGCCGCCGACACTAATTCAAATAGGTGTGAATGTGTGACACAATGACACGCATcgacattataataaaatactaatgaTAGTGGGCAATATCAGTCCTTTCCCTGAATGCAGGACTATTGCAGAATGGATTCATTGTTACTGAACTGTATGCATGTTCTCAGCGCAGATGATGTCACgtaacatgttttgtgtttgaaagcTGTTCCGCTGTCTTGCAATTGTTTGTGTACTCGACACTGCTCACTGTCTTGAGTTGTTGTAGTGTGTGTTGTGCAATtcaagtattaaataaaatctatatattgtCTG
>TU85837
TCCAGGGCTCTGCGGGAGTGATGGGGTGTTTTATGAACTGCATGTTCAGAtgtacccccccacacacagataATGAATGGAACAGATCGTCCGTGCTTTATTCTGGGACCAGAGTTCGCCGGGTTCAATCCCCATGTACCGCTCAGCCGAGGAGAAGATCTGGCCGCGGCGTGAGGCCTACGACGTGTTTAAACATCCCGTTTCCATTCACAGCAACATCAGCAGGAAGTCAGACGACTCCAGGAGagcctgagagacagagacaaggaGAATAAGAGGCTGACGTCCTCCTTCGAGACCATGAAGGCCTTCAACGACACTGTGAAGAAGCAGCTTCATGATGTCAGCGAGCAGAACAAAAGGCTGGAGAAGCAGGCGAGGAGCGTACAGGCCCGTCTGGAGAACTTGCAGCGGAAGCACGAGCTCTTGGCGGTGCAGAGGGGGCGAGAGAACATCCCCCCCGGCGGCCAGGACGTGAAGCGGGCGAGACGAGACCAGGCGGCCGCCGGGGCGCGACCAGCCAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014241 True 4104 mRNA 0.53 12 6059489 6081877
TU85822 False 2605 lncRNA 0.45 2 6059496 6062496
TU85829 False 1249 lncRNA 0.39 2 6107039 6108358
TU85837 False 526 lncRNA 0.58 3 6073171 6075910

Neighbor

gene id symbol gene type direction distance location
AMCG00014238 sh3rf3,LOC106582226 coding downstream 55261 6003637 ~ 6004228 (-)
AMCG00014235 NA coding downstream 148089 5908142 ~ 5911400 (-)
AMCG00014234 NA coding downstream 153236 5896567 ~ 5906253 (-)
AMCG00014236 NA coding downstream 165543 5893211 ~ 5893946 (-)
AMCG00014233 LOC107697803 coding downstream 168238 5886471 ~ 5891251 (-)
AMCG00014242 LOC106582183,LOC103353988 coding upstream 1001 6109359 ~ 6124346 (-)
AMCG00014239 NA coding upstream 37250 6145608 ~ 6163757 (-)
AMCG00014244 LOC106582186,LOC106586545,LOC108440498,LOC108437783 coding upstream 97570 6205928 ~ 6212795 (-)
AMCG00014246 NA coding upstream 112639 6220997 ~ 6222712 (-)
AMCG00014249 NA coding upstream 118343 6226701 ~ 6228443 (-)
G68680 edar,LOC107697794,LOC107757718 non-coding downstream 3158 6054111 ~ 6056331 (-)
G68595 NA non-coding downstream 233560 5825504 ~ 5825929 (-)
G68590 NA non-coding downstream 277097 5779485 ~ 5782392 (-)
G68581 NA non-coding downstream 349409 5709818 ~ 5710080 (-)
G68572 NA non-coding downstream 355562 5657305 ~ 5703927 (-)
G68722 NA non-coding upstream 426122 6534480 ~ 6534701 (-)
G68724 NA non-coding upstream 571667 6680025 ~ 6680288 (-)
G68757 NA non-coding upstream 882245 6990603 ~ 6990867 (-)
G68767 NA non-coding upstream 935767 7044125 ~ 7045812 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding upstream 945573 7053931 ~ 7054306 (-)
AMCG00014228 NA other downstream 380990 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 2664735 3385757 ~ 3394754 (-)
G68088 NA other downstream 3230345 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 3406242 2641059 ~ 2653247 (-)
AMCG00014134 NA other downstream 3516792 2531954 ~ 2542697 (-)
AMCG00014271 NA other upstream 1269730 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 1293794 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 1305371 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 2026545 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 2047574 8155932 ~ 8158590 (-)

Expression


Co-expression Network