AMCG00014267 (pou1f1,LOC107688653,LOC107551978,LOC107661330)


Basic Information

Item Value
gene id AMCG00014267
gene name pou1f1,LOC107688653,LOC107551978,LOC107661330
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7229073 ~ 7237562 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014267
ATGACGTGCCAGGCCTTCACCAGCGCGGACTCCTTCACTGCCCTCGCGGCTGACTCCTCCGCCCTGCCTCTGATCATGCACCACGCTGGCCCGGTCGACTGCCTGCCCGTCTCCAACCACACCACCAGCGTGGTCTCCGCAGTGCCGTCCGGCCTGTCTCTGGTGCAGTCTTCCAAGCGCTCCCACATGCACCTGTCCTCCTCCGCGCTAAGCAGCACCCCGGCCGGCCTGCACTACTCTGTCCCACCCTGCCACTACAGCAACCAACAGACCACCTACGGCATGATGGCAGCTCAGGAAATGCTCTCGGCCAGCATCTCCCAAACCAGGATCCTGCAGACCTGCAGCGTCCCCCACCCCAGCGTCGTCAACGGAGCCAACTCTCTGCAAGGCAGCCTGGCGCCCTGCCTGTACAAGTTCCCGGAGCACGGTCTGAGCGGCAGTTCCTGCGCTCTGGGCCACAGCTTCCCCCCGCTGCCCCCGGCCCTGCTGTCCGATGAGCCTGACCTGTCCGACTTCAAGCAGGAGCTGAGGAAGAAGAGCCAGCCGTCCGAGGAGCCGGTGGACATGGACTCGCCCCAGATCCGGGAGCTGGAGAGATTCGCCAATGACTTAAAGCTCAGGAGAATCAAACTAGGATACACCCAGACCAACGTGGGCGAGGCGCTGGCGGCGGTGCATGGCTCGGAGTTCAGCCAGACCACCATCTGCCGCTTCGAGAACCTGCAGCTCAGCTTCAAGAACGCCTGCAAGCTCAAGTCCATCCTGGCCAAGTGGCTGGAGGAGGCAGAGCAGGCTGGCGCCCTGTTCAACGAGAAGATTGGCATGAACGAGAGGAAGAGGAAACGCAGGACCACCATCAGCCTGGCTGCGAAGGAGGCCCTGGAGAGGAACTTCGGGGAGAAGAGCAAGCCCTCCTCGCAGGAGATTGTGCGCATGGCCGAGGGGCTGCACCTGGAGAAGGAGGTGGTGAGGGTCTGGTTCTGCAACCGCCGGCAGAGGGAGAAGCGCGTGAAGACCAGCCTGCACCACAGCAACTTCCACTCCCTCGGCAAGGACCCCTCTGCCTGCAGATAG

Function

symbol description
pou1f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell fate specification. Predicted to be located in nucleus. Is expressed in adenohypophyseal placode; adenohypophysis; brain; and hypophysis. Human ortholog(s) of this gene implicated in panhypopituitarism and pituitary gland disease. Orthologous to human POU1F1 (POU class 1 homeobox 1).

NR:

description
PREDICTED: pituitary-specific positive transcription factor 1

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09363 POU1F, PIT1; POU domain transcription factor, class 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014267 True 1077 mRNA 0.63 7 7229073 7237562

Neighbor

gene id symbol gene type direction distance location
AMCG00014261 NA coding upstream 155471 7073324 ~ 7073602 (+)
AMCG00014260 LOC107688668 coding upstream 174166 7050336 ~ 7054907 (+)
AMCG00014259 NA coding upstream 182198 7039754 ~ 7046875 (+)
AMCG00014253 NA coding upstream 496556 6731624 ~ 6732517 (+)
AMCG00014243 NA coding upstream 989152 6234803 ~ 6239921 (+)
AMCG00014266 NA coding downstream 40560 7278122 ~ 7285235 (+)
AMCG00014273 tomm70 coding downstream 207454 7445016 ~ 7455956 (+)
AMCG00014274 nit2 coding downstream 246500 7484062 ~ 7489351 (+)
AMCG00014281 lancl3 coding downstream 400259 7637821 ~ 7642535 (+)
AMCG00014282 xk coding downstream 407856 7645418 ~ 7653546 (+)
G68771 NA non-coding upstream 170754 7056707 ~ 7058319 (+)
G68738 NA non-coding upstream 484962 6743863 ~ 6744111 (+)
G68728 NA non-coding upstream 514252 6713171 ~ 6714821 (+)
G68698 NA non-coding upstream 982024 6244902 ~ 6247049 (+)
G68686 LOC106586545,LOC106582186 non-coding upstream 1022497 6204178 ~ 6206576 (+)
G68904 NA non-coding downstream 388426 7625988 ~ 7626404 (+)
G68982 NA non-coding downstream 636965 7874527 ~ 7874742 (+)
G69006 NA non-coding downstream 777182 8014744 ~ 8015003 (+)
G69023 NA non-coding downstream 895726 8133288 ~ 8136210 (+)
G69206 NA non-coding downstream 1496761 8734323 ~ 8735939 (+)
G68475 NA other upstream 2577109 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 3097355 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 4518744 2706840 ~ 2710329 (+)
G67896 NA other upstream 5098928 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 5326386 1900220 ~ 1902687 (+)
G68830 NA other downstream 108633 7346195 ~ 7349467 (+)
G68848 NA other downstream 176078 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 226941 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 2765496 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 2910417 10147979 ~ 10151913 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037738 pou1f1 coding NC_007120.7 CM002893.2 19132885 ~ 19161982 (-)