AMCG00014268 (chmp2b,LOC108435168)


Basic Information

Item Value
gene id AMCG00014268
gene name chmp2b,LOC108435168
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7240284 ~ 7254356 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014268
CGTCACGGCCTGGTGACGCGCTGTCATGTGAGCAGCGGGCGAGTTCCTGCCGGGACAGAACCAGGAAATAGGACCGTAAACACCGCGCCGCACGGACGGGCGCCGGCTGCTCAGCACTGCACTTCGTTTCTCGGCCTGCTTTCCAACGCGCATCGGTCCAGTTTATCCCTCTCCGTGTGCTCCCGTCCCTGCTGTGCTGTCTTGTCTCCAACCCGCTGAAAGCCATGGCTTCGTTGTTCAAAAAGAAGACGGTCGACGATGTCATCAAGGAGCAGAACAAGGACTTAAGAGGAACCCAGAGACAAATCGCCCGCGACCGAGCGGCGCTGGAGAAGCAGGAGAAACAGCTGGAAATGGAGATTAAAAAGATGGCCAAGACGGGCAACAAGGACGCCTGCAAAATCCTGGCCAAGCAGCTGGTGCAGCTCCGCAAGCAAAAGAACCGCACGTACGCCGTGAGCTCGAAGGTCACCTCCATGTCCACGCAGACCAAGATGATGAACTCCCAGATGAAGATGGCGGGGGCCATGTCTACCACGGCCAAGACAATGCAGGCCGTCAACAAAAAGATGGACCCGCAGAAGACCTTGCAGACGATGCAGAATTTCCAAAAGGAGAACATGAAGATGGGGATGACGGAGGAAATGATCAGCGACACACTGGACGACATCTTCGACGAGTCCGGAGACGAGGAGGAATCGCAGGACATCGTGAACCAGGTGCTGGACGAGATCGGCATCGAAATCTCTGGCAAGATGGTGAACGCGCCGTCCGCCGGCAGGAACCTGCCCAGCGCTGCCGCCAAGACCGCCACCATCTCGGACGAGGAGATCGAGAGGCAGCTGAAGGCCCTGGGAGTGGATTAACCACCGGAGAGAAGTGCCTCTTAAAACCCGAGCAGATGCTTTTTAGTCttgtttctcttctttttatttttcttccatggACTGTATCTGTGGCAACCGAGGGCATCTCAGAATGAGTAATTAccaaattaaagaaatgtaaatttatTCCTAATCTTGattaacacaatgtttttttgtttttttgcccgTTGGCTTTTGTGTTGTGCTGAATTGtgaaagaggagaggagggagagatcGGCCCTCACCTCACAGAAGCTGACGCCCCCCCTGTTTAAAAGCCACTCGATACTTTCCATGTATTCTAGAAACAGTATATGCAACGTGGGCGTGGCAGGCGCTGTGTATGGACTGACGTACCACTGTGCCAGTTAGCAAGACGCCCCCTGGAGGGCGGGGTCCCAGACGCCCTTCACTGCCGCCGCGCTTGTAAAGGTCTCATCTGCTCCTGACGCACGCAGGAGATTATAGCACCCCCTATAGATGCATATTgtatgggggagggggggtatttaacttatttaggcttttaagttttgttttgcatggtgTGGAGGACGGAGTGTACGTTTCACAGGGTCGGTTCCTCGTCTTCCCCCGTTCGTCGCCTCAGAATGCTGTGAATTGTAATTTGCAGATCGTGTCATATTCCCATCGGCTCTGTCAGTAATTCTGCCCTAGGTGAAGGGTCTCGTCTCAAAGCTGCTGACGTGAATAATGATAGAAGCCGACCCAGCAGTCTTCCTCCTCACGTCTGCAATTGTAAGACGTAATAATTTGACGAGAACTTCTGATTCTGAAGTGCTGATTCTAAGATTTCGAGGATCATGGTATCAGTGAAGGCTTATATTAATTCTGTGGATCTGAGCTAcaggtgtattttttttttgtattcatcttCTGTCGGACTCTTGATGGCAGCTGCTCTGGAATCGTTGTTGTCACCCACATCTCCATCCATCTCAGAAAGTGGCAATGCCAGTTCTTAAGATCGACGCCTGAATgcttgaatgaatgaatgcccTTTTTGTTGTGCGTTACTCTTGCTGACCTGTGCTGAATGTCCAAACAATAATTAGTTAGagacctttatagttaattgtgtgtgtgtcccccaaacacacacatgaatattGATGTTTCTCCTTCCCCACCGTTTGAAGTTGCTTTTATGTAGTTGTTGGTCTCTTACAAAACATCCGAACGCGTGAATGGCACGGGTTATAACTGAACGCAATGAGCGTCGACCCAAAATGACACAACCCACCTTCAGTCCCCGGCAGGCGTCTCCTCTCCATTTTAAAGTCATACGCGCAGTGCTCAGGTACAATATGATAATAAAACTGTGATCTCTTCAGCTCAGCGTCTCAAGACCTCTGATGAACATGTGCCTTTTGGGAGTCAAGCCTTATTCGTAGGTGATTCAATACTATAGGGAAAAGATTGTAATTAAAGCaaccacaaaaataacacattttggaCACTGGTGATCGAGCGATTCTCTTCTCTATACAGGAAATGTCCTCGGTTCAGTATTCACTTCCCAACTCGCCCTGTAGGAATAGTGAAGCCACTGACCTGCTTTCAGACGAACACACGCGAATCGCCTGTACAGTTAAACCAGGCCAGTCCAGGGAGCTACTCTGGATGGTCGGCTGCCCATTCGCGCTGAACTGGGGCTCCACGTCGGCGATCCTGCGGCCCAGCTGGGCTCGGGCCCGGTCCTCTGCAGCCCCGTTTCCCGCTGCTTGCCTGGTGCGTCTCTCCCTGCGTTGGCCGGCGTCCAGTCATGCTTCATACGCAGCTTCCCAACCCCTTCCACTGTgcgcctctctccctctccgctCAGTGTAACGGCATCCAGAAGCAACGGCTCTGTTCTCCCGGCCAGCTTGTCATTCCTGAGATCCGAAAAGTGCTGCTCGACACATTTTAATtcgtagtagtaataataatgatgatggaTCTGTAGTGTTGGCAGAATGCTCGTAGCCGTGGACAGGAGTGTTGTGTGTCCGTGTTCGGGGGCTGAAGGGCTGAGGTGTCTCCCCAGTGTGTCCTGCATCATTTAGACCCATTTCCCATCCCCAAGAAATCTCATCCCGCTGAGATCCGAACCTCCTTTCAGCTGCTTATGAAATCATTATCTCTGTTGATGCACAGAGGTTTCCCCGTAGGACACACACCCACTTATGTCTGTGCAGGGacagttttttcatttttattacacaacGGCACCTGGGAGTTTCGCTGGCCATTAAtgaatttttgttgttgtttttaattctcaTAACCGCTTTATAAATGCTGGGATTAATCAAGTAATGCTGAGAGTGGAAACGTTCTTAAGGGGaaatctgtgtttctctgtaacCCAGTCTTGTTGTATATCTCAGATTTCACTGTCACTACATGGAAAATACCTGGAAAACACTCCTGttcctcttgtttttttttctctaatggGTGTGAATAAcaaagcagttttctttttaaggatATGATTGCCTCTTCTGTAGATATTGAGCAGCCTCTGTTTCCTCAcagtatgtttatttaatacatttaacataaagGTTGTTTTTAGaccttttaataataacaacgaatgtgtgtgtttcattaaaatgattgtacagttatttgttttgttatcccTTTGCCATAAATAAATTTCTTTTCGTA

Function

symbol description
chmp2b Enables protein domain specific binding activity. Involved in several processes, including midbody abscission; regulation of cell cycle process; and viral budding via host ESCRT complex. Located in cytosol. Part of ESCRT III complex. Colocalizes with late endosome; lysosome; and plasma membrane. Implicated in amyotrophic lateral sclerosis; chromosome 3-linked frontotemporal dementia; and frontotemporal dementia.

NR:

description
PREDICTED: charged multivesicular body protein 2b

GO: NA

KEGG:

id description
K12192 CHMP2B; charged multivesicular body protein 2B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014268 True 3553 mRNA 0.48 6 7240284 7254356

Neighbor

gene id symbol gene type direction distance location
AMCG00014265 NA coding downstream 146971 7077039 ~ 7093313 (-)
AMCG00014262 NA coding downstream 169560 7062062 ~ 7070724 (-)
AMCG00014264 NA coding downstream 178306 7061721 ~ 7061978 (-)
AMCG00014263 NA coding downstream 197568 7040731 ~ 7042716 (-)
AMCG00014258 epha3 coding downstream 352194 6887026 ~ 6888090 (-)
AMCG00014269 LOC108441420,LOC107582737,LOC107726519,LOC106592197 coding upstream 93096 7347452 ~ 7365740 (-)
AMCG00014270 LOC102779158 coding upstream 113038 7367394 ~ 7376923 (-)
AMCG00014277 NA coding upstream 133262 7387618 ~ 7397769 (-)
AMCG00014279 NA coding upstream 170772 7425128 ~ 7425676 (-)
AMCG00014275 NA coding upstream 171865 7426221 ~ 7436106 (-)
G68774 NA non-coding downstream 181965 7054777 ~ 7058319 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding downstream 185978 7053931 ~ 7054306 (-)
G68767 NA non-coding downstream 194472 7044125 ~ 7045812 (-)
G68757 NA non-coding downstream 249417 6990603 ~ 6990867 (-)
G68724 NA non-coding downstream 559996 6680025 ~ 6680288 (-)
G68826 NA non-coding upstream 33707 7288063 ~ 7288335 (-)
G68827 NA non-coding upstream 34580 7288936 ~ 7289437 (-)
G68829 NA non-coding upstream 85995 7340351 ~ 7340555 (-)
G68867 NA non-coding upstream 186144 7440500 ~ 7441172 (-)
G68874 NA non-coding upstream 201622 7455978 ~ 7459889 (-)
AMCG00014241 NA other downstream 1131926 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 1561785 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 3845530 3385757 ~ 3394754 (-)
G68088 NA other downstream 4411140 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 4587037 2641059 ~ 2653247 (-)
AMCG00014271 NA other upstream 123732 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 147796 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 159373 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 880547 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 901576 8155932 ~ 8158590 (-)

Expression


Co-expression Network