AMCG00014269 (LOC108441420,LOC107582737,LOC107726519,LOC106592197)


Basic Information

Item Value
gene id AMCG00014269
gene name LOC108441420,LOC107582737,LOC107726519,LOC106592197
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7347452 ~ 7365740 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014269
GCTCAGTGTTTAGTGCTCAGTGCTCAGGGCTCAGGGTTCAGTGCTCAGGgctcagtgttcagtgtttagTGCTCAGGGCTCAGTGTTTAGTGCTCAGTGTTTAGTGCTCAGTGTTTAGTGCTCAGGGTTCCCCCGCCTCGAGACCGACCTACCCGGGTCACAGTCCTCGCGCCGCGGGAGCGCACGAGCAGAGCCGCCTCGATCCGGACCGCACTTCGGACCCCCTCTCAATTCGGACTGGACGTCGGATTCGCCTACCTTCGGTGTGTTCTGGACGATGACCCCCCACGCTGTGTCTTGGGTCTGAATGCATCCGGGTCCTTTTCGCCACGAGCCATGATGATGTCACCCGCCCCCTACCCGAGGACAGTCAACCGGTACATGTCTCCCCTGGTCAGCGGCCGCAGCCCAACGGCGTCGCTGAACTCCCCCGAGGAGAACGACGAGACTGTGAGCGACGATTCCCTTCCCAGCCTGCCGTCCCACCCCTGCGCCAGCCCCCAGAGCCACTCGCCCCTCAGCAGCCTGGACCCAATGACAGAGGGGGCCCCCTGCCGCGCAGCTGCTGCCCTGCACTGCCTCGGCCCGTACCAGCCCCGCCACGGCCTGGACTACGGTCGGACCGCGCCCTTCCCTGTCTCGGTGTCCCTGAACTGCCCCGATCGCACGGCCGGAGCCTGGCTGCCCCCCAGCTTCTCCAGCAGTGGCTGCGGCTCCGGCGGGGGGTACCCCAACACCCTGGCCTCTGGGGAGTACTCTGGCTACCCCGGGCAGGACTGCTACCCCATCATTGGGCACCAAGCCCCCTCACTGTCCCCCAGCAGCCACAGCTTCAGCCTCAACCTGGACCCACCCCAGTCCCTGCGCTCCATCCCGCCCCTGGCCACCACTGGACACAATCCTTACCTGACCCCCTACCACTGCTGGCCCAGGGGCCCCACGTGTTGTGTCCAGTGTCCTGGGGATCGCTACTGCATGGCACCCTctccacagcacagagcagcgcCAGGATACCATCTACCCGGTGCCCACCCTGGCCCTGCTGGCTGTCCTCACCCCGATACAGGCTCCACACAAAGCGCATACACCCCCAATGGTCTGCGGAAAGAGAATTACATGTGCAACACGGCACTGTCCTTGGAGCAGAGGAAGGTGTTCGTGACGTACGAGGCCGACAGTGACAAACACGTCCATGAAATCATCCAGTTCGTGGCCTTGCTGCGGAGAAACGGGTTTGACACTCGGATCGACGTGTTCGAGCAGCAGTTTAAGAGCATCAGCAAAATCGACTTCATGGAAAAATACATCAGTGAGAAAGACTACCtgatcatcatcgtcatcagcCCCAAGTACCATGAGACGGTCACCAGTTCCCACATCGCCTTGGACAAAGACGAGAACACCCTGAACACCGTGTACATCCACAAGCAGCTGCAGAATGAGTTCATCCAGAACGGCAGCAAGAATTTCCGCTTCATCCCGATTCTGTTCCCTGGGGCCAAAAAGTGCCACGTGCCCACCTGGCTGCAGAACACACACGTGTATAGCTGGCCCAAGGACCGTGACGACATCCTGCGCCGGCTCATGAGAGTGGAGAAGTACAACCCCCCGCCGATCGGGAAGCTGCCCACCATTGTCTCCATCCCCATCTAGGACTCCCAGAGAGAGCGCGGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108441420 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014269 True 1674 mRNA 0.62 11 7347452 7365740

Neighbor

gene id symbol gene type direction distance location
AMCG00014268 chmp2b,LOC108435168 coding downstream 93096 7240284 ~ 7254356 (-)
AMCG00014265 NA coding downstream 254139 7077039 ~ 7093313 (-)
AMCG00014262 NA coding downstream 276728 7062062 ~ 7070724 (-)
AMCG00014264 NA coding downstream 285474 7061721 ~ 7061978 (-)
AMCG00014263 NA coding downstream 304736 7040731 ~ 7042716 (-)
AMCG00014270 LOC102779158 coding upstream 1654 7367394 ~ 7376923 (-)
AMCG00014277 NA coding upstream 21878 7387618 ~ 7397769 (-)
AMCG00014279 NA coding upstream 59388 7425128 ~ 7425676 (-)
AMCG00014275 NA coding upstream 60481 7426221 ~ 7436106 (-)
AMCG00014280 NA coding upstream 203571 7569311 ~ 7580100 (-)
G68829 NA non-coding downstream 6897 7340351 ~ 7340555 (-)
G68827 NA non-coding downstream 58015 7288936 ~ 7289437 (-)
G68826 NA non-coding downstream 59117 7288063 ~ 7288335 (-)
G68774 NA non-coding downstream 289133 7054777 ~ 7058319 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding downstream 293146 7053931 ~ 7054306 (-)
G68867 NA non-coding upstream 74760 7440500 ~ 7441172 (-)
G68874 NA non-coding upstream 90238 7455978 ~ 7459889 (-)
G68875 NA non-coding upstream 99669 7465409 ~ 7465662 (-)
G68905 NA non-coding upstream 260245 7625985 ~ 7626375 (-)
G68981 NA non-coding upstream 508413 7874153 ~ 7874358 (-)
AMCG00014241 NA other downstream 1239094 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 1668953 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 3952698 3385757 ~ 3394754 (-)
G68088 NA other downstream 4518308 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 4694205 2641059 ~ 2653247 (-)
AMCG00014271 NA other upstream 12348 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 36412 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 47989 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 769163 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 790192 8155932 ~ 8158590 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_07721395_07728614 TRAF3IP2L coding CI01000340 null 7721395 ~ 7728752 (+)