AMCG00014270 (LOC102779158)


Basic Information

Item Value
gene id AMCG00014270
gene name LOC102779158
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7367394 ~ 7376923 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014270
ATGCAGCTGAGGAAGTGTGTGAACCATCCCTATCTATTTGACGGTGTGGAACCGGAGCCGTTCGAGATGGGGGAGCACCTGGTGGAGGCCAGTGGGAAACTGCACCTCCTGGACAGCATGCTGACCTTCCTGCACCACAAGGGCCACCGGGTGCTGCTGTTCTCCCAGATGACACGCATGCTGGACATCCTGCAGGACTACATGGAGTACCGAGGCTACAGCTACGAGCGGCTGGACGGATCAGTGCGTGGGGAGGAGCGCAACCTCGCCATCAAGAACTTTAGCAGCAAGGACGTGTTCGTGTTCCTGCTGAGCACCAAGGCTGGCGGGGTGGGGATGAACCTGACGGCTGCCGACACCGTGATCTTCGTGATCCGGCTGCTGGCGCGGGACACGGTGGAGGAGGTGGTGTACCGGCGCGCTGCCTCCAAACTGCTGCTGACCAGCACGGTGATCGAGGGCGGGCACTTCTCCCTGCTGGACCAGGCGGACTCCGGCACGGCGGGACTGCAGCTCCACGAGATCCTGAAGTTTGGCGTGGACAAACTGCTGTCCTCGGAGGAGAGCTCGGTGCAGGACGTGGACCTGGGACTGATCCTGGGACAGACGCAGGGGGGCGAGTGGGTGATGGATCAGGAGCCCCCCGTCTCCAGCGAGGTGGACAGCGAGGACGACGGCGAGGGGAAGACCCACATGTATCTGTACGAGGGCAGGGATTACTCCCGGGACACCAGCGCAGAGGATCAGAGAAGCTTTGAGAAGCTGCGGGAGCTGCATGCCACCCTGCAGGGGGCGCTGGGGGCAAAGGGGCGATCTCTGCGCAACAAGCCCAGCGTCTCCCTGTCCGGCCCCCTGGAGACCGTGCTGCGCAGGAAGAGGGAGCTGAGTGAGACGGAGCTGGAGCTCAGGAGGCAGAGGAGGCAGGAGGCGGCGGCCAAGAGGGCCAAACTGAGAGCGGACCGGGAACgtcagcagcaggagcagcagctgaAGAAGAAGATGGCGTGGTGGGAGTCCTGTGGGTACCGCTCTCGGTGCGTCCCCTCGGAGGACAgcgatgaggaggaggaggaggaggacggcAGCCTGTCCTCCACGGACTCGGAGTGCACGGACATCCGCTACGTGCTGGGGGACGTCACCCACCCCCAGGCGGCCCGGGAGGATGCCATCATCGTACACTGCGTGGatGACTCAGGGCACTGGGGCCGCGGCGGGCTCTTCACGGCGTTGGAGGTGCGGTCAGACCAGCCCCGCAGGCAGTACGAGCTGGCCGGCGAGATGAAAGACCTGGATCTGGGACATGTGCTGCTCTTCCCTATCGACGATAAGGAGTCCAGGCTGGATGGGCAGGACCTGCTGGCCCTGGTCGTGGCTCAGAAAAGAGACCGATCCAACAACCTGTCCGGCATCAAGCTCTCGTCCCTGGAGGACGGCCTGAGGAAGATCTACAGAGTGGCCAAGAAGAAGAGAGccagTGTCCACCTCCCGCGTCTTGGTCACGCCACTAAGGGCTTTAACTGGTACGGTACAGAGAGGCTGATCCGCAAGCACCTGGCCTCCCGGGGAATTCCCACCTACATATATTACTTCTCCAGGAATGCGGCCCCGGCGAAGCCCCCAGCCTCCAGCGGCGCCGGGGTGAGGAGCGTGGTCGGAGCGGACGAGGCCGGGCCCAGCTCGGTCCCTGACCTGGACGACTTCATGAGCGGAGTCCATGTGTTCTTCTACAACATCGCCGCGTCGGACAGGAAGAGACTGGCCCGCTTCCTCCCCGGCACCTACGACGGCAACGAGGCCGACCAGCTGGGCGCGGATGTCACGCATGTGGTGGCCGAGGTGGAGAGCCCCGTTCACGCGCAGGAGCTGGAGGCCCTCCTGGCGCAGCACCCCCGGGCGCTGGCTGTGAAGACGAGCTGGCTGGAGGCCTGCTTCTCCCAGCAGAAGAAGGTCGGCACGGCTCCGTACCAGATCGGCGCGGACTGACGTAACCGGCCCGGGTCTCCTCTTGTTCGGGCCCAGGAGATCTGGATCAAatggagttttatttttgttgttatcggctcttttgtgtgtgactaggatgtatttatattaacatactGAATACAAACATACCTTTTTACAGAGTGCACATATacttataattgtattttacagtaaaacgTGTGAATTATTTAGAAACTAGATTCCAGATCTGTAGTCCAAtcagttattttgtattcataagGTCTTCCTAGGCAGTTTTCTAATGGGATTTTTCCATGAATTAAACTTTCCTGTGTTGCATAAGTTCCTGTATTCTGCTTTCAAAATGCTCTGGCTCGGATGTTTCCGTGACCCTCCCCTGGCCACACAGCGCTCTACTGTGCAGTTACCGGCActtgacactgacacacagagggCTGTGTTGTTGCTCATTGTTTACACATCTGTAATGTACCCATTTTCTCTTATTTAGCTCATGTGTGGAGACATTGAATGACTGAAAAACCTGTTCATGTGGGCAAtagcaaaataatatatacatgtcatttaaaaagaaaaacctcgATCTGTTACCTTTAAGCTGTTTTGTCAGAgttgcatattttaataaacgATACTGATCTTCTAGAACAAA

Function

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 1-like, partial

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K20092 CHD1L; chromodomain-helicase-DNA-binding protein 1-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014270 True 2623 mRNA 0.58 17 7367394 7376923

Neighbor

gene id symbol gene type direction distance location
AMCG00014269 LOC108441420,LOC107582737,LOC107726519,LOC106592197 coding downstream 1654 7347452 ~ 7365740 (-)
AMCG00014268 chmp2b,LOC108435168 coding downstream 113038 7240284 ~ 7254356 (-)
AMCG00014265 NA coding downstream 274081 7077039 ~ 7093313 (-)
AMCG00014262 NA coding downstream 296670 7062062 ~ 7070724 (-)
AMCG00014264 NA coding downstream 305416 7061721 ~ 7061978 (-)
AMCG00014277 NA coding upstream 10695 7387618 ~ 7397769 (-)
AMCG00014279 NA coding upstream 48205 7425128 ~ 7425676 (-)
AMCG00014275 NA coding upstream 49298 7426221 ~ 7436106 (-)
AMCG00014280 NA coding upstream 192388 7569311 ~ 7580100 (-)
AMCG00014284 NA coding upstream 291630 7668553 ~ 7675258 (-)
G68829 NA non-coding downstream 26839 7340351 ~ 7340555 (-)
G68827 NA non-coding downstream 77957 7288936 ~ 7289437 (-)
G68826 NA non-coding downstream 79059 7288063 ~ 7288335 (-)
G68774 NA non-coding downstream 309075 7054777 ~ 7058319 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding downstream 313088 7053931 ~ 7054306 (-)
G68867 NA non-coding upstream 63577 7440500 ~ 7441172 (-)
G68874 NA non-coding upstream 79055 7455978 ~ 7459889 (-)
G68875 NA non-coding upstream 88486 7465409 ~ 7465662 (-)
G68905 NA non-coding upstream 249062 7625985 ~ 7626375 (-)
G68981 NA non-coding upstream 497230 7874153 ~ 7874358 (-)
AMCG00014241 NA other downstream 1259036 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 1688895 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 3972640 3385757 ~ 3394754 (-)
G68088 NA other downstream 4538250 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 4714147 2641059 ~ 2653247 (-)
AMCG00014271 NA other upstream 1165 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 25229 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 36806 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 757980 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 779009 8155932 ~ 8158590 (-)

Expression


Co-expression Network