AMCG00014271


Basic Information

Item Value
gene id AMCG00014271
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7378088 ~ 7386984 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014271
ATGGGCAACAggctgggggggggcgggggggtcaATGATGCCCAGCTCTCCTGTCCTGGAAACATCGGCACAGTACTGGAGCTGCCCTCTGCCAGAGACACTATgcagaacacacaacacacagGGCATGAGAAAGTGTCAACCCTACCCACAGGGATCAAGCTGAGGTCCTACCAGCTGGATGGCGTGAGGTGGCTGACCCAGTGCCTGCAGAACCAAGAGGGCTGCATCCTGGGGGACGAGATGGGCCTGGGGAAGACCTGCCAGACCATCTCCCTGCTGGTGTACATGTGTGGGGCGCTGCGGCAGGACGGGCCCTTCCTGGTGCTGAGCCCACTGTCCGTGCTGAACAACTGGAGTGAGGAGCTGCAGAGGTTTGCCCCCGGGCTGTCGGTGGTGTGTTTCTCTGGGGATAAGGAGGCGAGAGCTGAGCTGCAGAAAGATCTCAGGAGCAACAAGCGCTTCCACGTCCTGCTCACGACCTACGAGGTGAGGGGAGCCGGAGACAGGCCAGACTGCAGGGGGTCTGCGGGGTTTGTGTGA
>TU86038
GAAGAATTAGGCGAGTGGCAGTAATTGGGTGCATTGTTCCTTTACATTGAGAAAACTGGGGCTTGTGGAAAGGGACAGTCAGTGGATGCAGATTTTAAAGCACTGCTTCCAACTTCTGCAGACTTTATGATTTTGTGCTGAAGCATGTTGTGCACTTTGGCTGTTTTGTATGTTTCCCTATTTCTAATGAACCTGCTATGTGCCTAAGCTGTAAAGTTTCAAGAAGAATCACATACCTGACCCCTCTCGAAGGTCAAACGGCCCACCCATAGTCACCCAGTGCAGCACCCAGTCTGCTGCAACGCAATGCCAGAGCAGGGCATGAGAAAGTGTCAACCCTACCCACAGGGATCAAGCTGAGGTCCTACCAGCTGGATGGCGTGAGGTGGCTGACCCAGTGCCTGCAGAACCAAGAGGGCTGCATCCTGGGGGACGAGATGGGCCTGGGGAAGACCTGCCAGACCATCTCCCTGCTGGTGTACATGTGTGGGGCGCTGCGGCAGGACGGGCCCTTCCTGGTGCTGAGCCCACTGTCCGTGCTGAACAACTGGAGTGAGGAGCTGCAGAGGTTTGCCCCCGGGCTGTCGGTGGTGTGTTTCTCTGGGGATAAGGAGGCGAGAGCTGAGCTGCAGAAAGATCTCAGGAGCAACAAGCGCTTCCACGTCCTGCTCACGACCTACGAGctcTGTCTCAAAGATGCCTCCTTCCTGAAAAGGTGGCAGTGGCGCGTGCTGGTGGTGGACGAGGCGCACAGGCTGAAGAACCCCAACTCCCTACTGCACAGGACTCTCTCAAGGGTGAGCTCCCCGCCCCG

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014271 False 543 mRNA 0.62 4 7379689 7386984
TU86038 True 814 TUCP 0.56 5 7378088 7380780

Neighbor

gene id symbol gene type direction distance location
AMCG00014270 LOC102779158 coding downstream 1165 7367394 ~ 7376923 (-)
AMCG00014269 LOC108441420,LOC107582737,LOC107726519,LOC106592197 coding downstream 12348 7347452 ~ 7365740 (-)
AMCG00014268 chmp2b,LOC108435168 coding downstream 123732 7240284 ~ 7254356 (-)
AMCG00014265 NA coding downstream 284775 7077039 ~ 7093313 (-)
AMCG00014262 NA coding downstream 307364 7062062 ~ 7070724 (-)
AMCG00014277 NA coding upstream 634 7387618 ~ 7397769 (-)
AMCG00014279 NA coding upstream 38144 7425128 ~ 7425676 (-)
AMCG00014275 NA coding upstream 39237 7426221 ~ 7436106 (-)
AMCG00014280 NA coding upstream 182327 7569311 ~ 7580100 (-)
AMCG00014284 NA coding upstream 281569 7668553 ~ 7675258 (-)
G68829 NA non-coding downstream 37533 7340351 ~ 7340555 (-)
G68827 NA non-coding downstream 88651 7288936 ~ 7289437 (-)
G68826 NA non-coding downstream 89753 7288063 ~ 7288335 (-)
G68774 NA non-coding downstream 319769 7054777 ~ 7058319 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding downstream 323782 7053931 ~ 7054306 (-)
G68867 NA non-coding upstream 53516 7440500 ~ 7441172 (-)
G68874 NA non-coding upstream 68994 7455978 ~ 7459889 (-)
G68875 NA non-coding upstream 78425 7465409 ~ 7465662 (-)
G68905 NA non-coding upstream 239001 7625985 ~ 7626375 (-)
G68981 NA non-coding upstream 487169 7874153 ~ 7874358 (-)
AMCG00014241 NA other downstream 1269730 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 1699589 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 3983334 3385757 ~ 3394754 (-)
G68088 NA other downstream 4548944 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 4724841 2641059 ~ 2653247 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 15168 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 26745 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 747919 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 768948 8155932 ~ 8158590 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 996301 8383285 ~ 8384224 (-)

Expression


Co-expression Network