AMCG00014272 (tbc1d23)


Basic Information

Item Value
gene id AMCG00014272
gene name tbc1d23
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7464503 ~ 7482560 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014272
ATGTACCTGCAGCAAAGTGCCCTCTGTCCTGCCCTGCGCTCTTTGCTGCAGCTTTTGGCAACCCAGGGGGAGGGGGCCAGTGCAGTGCGTGTGCAAACTGAGTTGGGCTTTTGCACCACTTCACTGAGTATTGATCTGCTGCTGCTTGGGGGGAGAGGCCATGTGCAGTGTGGGGGCACTCAGGAGTGTGAGGCGCAGTTAGGGACATTATCACTGGAAAACACTCTCTACACTGATACCACTTACCCTCTATACACTGAAATCGAGACCAGACCAGTCTCACCCCCcgaaacacacactcacagccgGCTGGCCCCACCTTACCTTCCATATCTGGGCCCTCTGCTGGGCAGGCAGCTCCCGGCCCTGGATAATGTTCCTCACCGTCTCCAGGTCACAACCTCCCGAGTCCAGAGCCTCCGCCAGCTCCCGATTGCACTAAACGTGGCCGGGAAGGGGGATAGCCTGGCTTCCTGGGACGGCTCTCTGGACCTGCCCGAGCAGAGCCTCATTCACAGCCGGTGCCAGCAGCTGCTCGACCAGCTGTCCGTGCCGGAGGAGAGCCGGGACGCCGCCCTGGCCGACACCGAGGCGGTCATCACCTTCTACTGCAAGTCGCGCAACATCACCTTCACCCCTGACCTCAACTGGCCGCACCTCCTGCGGCCCCTGCTCGGCCTGCAGCTCCCCCGCAGCGACCTGTACAACTGCTTCTACGCCATCATGAACAAGTACATCCCCAGggacTGTGTGCCCAAGGGCCGGCCCTTCCACCTGTacaggctgctgctgcagtACCACGAGCCCGAGCTTTGCTCCTTCCTGGACACCAAGAAGATCACTCCTGACTCCTATGCCATCAGCTGGCTGGGCAGCCTTTTCTCCAGCCACTGCCCCCCCGAGGTCACGCAGGCCATGTGGGACGTCTACCTGCAGCAGGCCGACCCCTTCCTCATTTTCTTCCTGATGCTCATCATCCTCGTCAATGCCAAAGATGGCATTCTGGCTCAGGAAGGAGACGGTAAAGAAGAAATCGTCAAGATGCTCGAGAGCTCCCCGGCCTACCTGGAGTGCGAGGACCTCGAGGACCTGTTCTCCCTGGCGCACTATTACTACAGCAAGACCCCGCTGTCCCTCAGGAAGGAGAACCAGAACCTGTTTGGCAGCAGCCTGGTGGCcctgaaggaggaggagatggaccTGAGCCAGGCGCTGTGTCTGCCCGTGTCCGTGCCCGAGATCCTGCAGGCCAACCAGCTGCAGGCGGAGGGCGTTCGCTTCTTCGTGGTGGACTGCCGGCCAGCGGAGCAGTACAATGCCGGACACCTGTCCACCGCCTTCCACCTGGACTCGGACCTGGTGAGTGCCCTGTGTCCGGCGCTGTCTCTCAGGGCTGAaggtgtccctgtgtgtctgtgtcccccGGGGTCCCAgcccttgtgtgtctgtgtccctcgGTGTCTGAGCCCTGTGTTCGTGCCGCAGATGCTGCAGAACCCCTCCGAGTTCGCGCTGTCAGTGAAGTCCCTGCTGGAGGCGCAGAAGCAGTCCCTGGAGTCCGGCTCTGTGGCCAGCGGGGAGCACCTGTGCTTCATGGGCAGCGGGCGCGAAGAGGAGGACATGTACATGAACATGGTGCTCGCGCACTTCCTgcagAAAAACAAGGAATATGTGAGCATCGCCAAAGGAGGGTTCATGGCTCTGCAGCAGCACCTGGCTGACATCAACGTGGAGGGGCCGGACAATGTGTACGTGCACTGGATCGTCAGCACCTCGGGGCCCCGCGGCAGCATCGGCTCCGCAGACGAGAAGGTGATCAGCTTCATTGAGAACACCTCCACACCTGTGGACAGACTGTCGTTCACTCTGCCCTGGCCCGAGAAGGAGACCCCCGAGAGGCACGTGAGCAGCAGTGACCGGGTGGGGAAGCCTTACCGCGGGGTGAAGCCGGTGTTCAGCATCGGAGATGAGGAGGAGTACGACACGGACGAGATCGACAGCTCGTCCATGTCCGACGACGACCGCAAGGAGGTGGTGAACATCCAGACCTGGATCAATAAGCCGGACATCAAGCACCACGTGCCCTGCAGCGAGGTCAAGGAGACGGGCCACATGTTCCCCAGTCATCTCCTGGTGACAGCCACGCACATGTACTGCCTGCGGGAGATCGCGTCTCGGAAGGGCTTCGCCTACATCCAATCCCGGCAGGCGCTGAACTCCGTGGTGAAGATCACGTCCAAGAAGAAGCACCCCGAGCTCATCACCTTCAAGTTCGGCAACAGCAGCTCCTCAGGGGTGGAGATCCTGGCCGTGGAGAGATACTTGATACCAAATGCCGGCGACGCCACCAAAGCCATCAAGCAGCAGATCATGAAAGTGCTGGACGCCCTGGAGAGCTGATGACCGGGAGGTGGAGGACGGGGGGCGCTCCCCGAGGGACGGCGAAGTGGCTGGGCGTGGCCCGCAGCGCTGCTCTCTGCCCTCCCCGCCGCGGAGTGGGGGGGCAGATATACACAGCAGAGAGCGGCCACTGTGGGGACGGAGACGCGTTGTTGTCTGTTCcactttttattcttttcctcttcgttttttttttttgtaaatacttaaaaaaagatgcagtaTGTTATTACAGGCCCGTTTAATCTTTTGTTTTGGCGTTTGCCTCTAGCCTTAATGAGAGCAGCTGTGAGAGGCGTGGACTGTGCGCCAGAAGGGTGTTATCTGAGAGACACTGCGGCTCATAGGACCAGTCACCAGAAACTGACTACGGTGTTATTACTCATTGGAAACATCCAGCGCTTGCCTGCACCAAAtggtttgatttttctttattacGGTTCTTTTCGCCGGACGGGCGTTTCAGAGCACAGGCTGCCCCCCTGGCTCGCATTCTCAGTTGCTTTATGTTGGGATCCCTCCAGGGCTGGACTCCATGCTGTCGGCAGCTTTGCCTGGAGGAGCTCCAGCCTGGTGGAGGATGCTGCGTCTCTCTTCCTCGTATCGATTCTCTTTGGCGTAGAAACGGAtgattgagagagggagaggatctGAGTTCGGTGTTTGCCTGATGGCTGCGGTTCAGTCTGGCTACTGTGTACATAACATTTATGTCTGttgtttccccccctccccccaaggTCAATGTCCTCGTTAAAAATCTCTATTTTGATATCCGCCCCATAATATTTTCAGCTTGTAGCCTTAACCTTGAAACGCTGTGGGTGTCGGTGACTACAAATACTTCCTGTAAATATCGTATGCTTGTGTTGTTACCCCAtaaggcccagagctggagtaTGTGGGACCTGAAGGGTATGAGTGCAGGTTTTGCTGGTGTCCCATCAGttttgagagagggagagagatggcaGGCAGACGCAGTAAGAGGTGTTTTACTCTACTGCCAGGGTCTGCCCCCTCCCTGTGACtctgtgtggtcagtgtgtctgtctgaggaATCTGTGGGGTCTCGGTCTGATTGGGAACGAACTCGGCTGTCCTGTCCCGTCTGGGAGGTCACGGCACGGGGGCCCATAGGCACGGAGGACAGGGTCATGTAAGGCGGTTTAccttctgtctctcttcctctcgAACTCTACTGttacacgcacacgcatgcacgctctctctctcgggaCGGGAACActactttgtgtgtttgtgcacgATTGTGAGGCGGTACGTCAACACAGCCATATGTGACAACAAATAGCCACAGGGCAGCCTGGAGGACGAgtgccccctctctctcgctctctgatGTTCACTAATCCAGTAGCGAAGATGTTGAGCCTCTAAGAAATCCAGAGCTCTACAGTGTTGCCCTGGCTGCCCCATCCGCCCCCACCCCTCCGCTCTGCAGACTATAGGGGGTCTTCAAACTTCAGCTCCTATGCAAACGAAAAGGAAACAACCACTTGGGGTGAGAGGGGTGAGGTGTGCAGGGGCTGTAGTGCCACACGGGGAAATCCTCTGGAACATGTCTTTTGAATTGACCTCATTAATATGCTTCAGCTTTTCTAATTCTGTAAAGAGATAAAAATACCTGAATTATTTGTAGTAATAACAGTTGTTTTGTGTTAACTGCaccttatgtttttttt
>TU86061
CACTGAAATCGAGACCAGACCAGTCTCACCCCCcgaaacacacactcacagccgGCTGGCCCCACCTTACCTTCCATATCTGGGCCCTCTGCTGGGCAGGCAGCTCCCGGCCCTGGATAATGTTCCTCACCGTCTCCAGGTCACAACCTCCCGAGTCCAGAGCCTCCGCCAGCTCCCGGTCCCTGAGAGAGGCAGGGGATACAGGTCAGTCCATGATGAGGGACAGCCTCAGC

Function

symbol description
tbc1d23 Involved in embryonic brain development. Acts upstream of or within brain development. Predicted to be located in cytoplasmic vesicle. Predicted to be active in trans-Golgi network. Is expressed in head. Used to study pontocerebellar hypoplasia. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TBC1D23 (TBC1 domain family member 23).

NR:

description
PREDICTED: TBC1 domain family member 23 isoform X3

GO:      GO:0005097,GO:0032851

KEGG:

id description
K22555 TBC1D23; TBC1 domain family member 23

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014272 True 4106 mRNA 0.57 18 7464503 7482560
TU86061 False 233 lncRNA 0.62 1 7469078 7469310

Neighbor

gene id symbol gene type direction distance location
AMCG00014273 tomm70 coding upstream 8547 7445016 ~ 7455956 (+)
AMCG00014266 NA coding upstream 179268 7278122 ~ 7285235 (+)
AMCG00014267 pou1f1,LOC107688653,LOC107551978,LOC107661330 coding upstream 226941 7229073 ~ 7237562 (+)
AMCG00014261 NA coding upstream 390901 7073324 ~ 7073602 (+)
AMCG00014260 LOC107688668 coding upstream 409596 7050336 ~ 7054907 (+)
AMCG00014274 nit2 coding downstream 1502 7484062 ~ 7489351 (+)
AMCG00014281 lancl3 coding downstream 155261 7637821 ~ 7642535 (+)
AMCG00014282 xk coding downstream 162858 7645418 ~ 7653546 (+)
AMCG00014283 NA coding downstream 176908 7659468 ~ 7664529 (+)
AMCG00014285 NA coding downstream 230829 7713389 ~ 7729891 (+)
G68771 NA non-coding upstream 406184 7056707 ~ 7058319 (+)
G68738 NA non-coding upstream 720392 6743863 ~ 6744111 (+)
G68728 NA non-coding upstream 749682 6713171 ~ 6714821 (+)
G68698 NA non-coding upstream 1217454 6244902 ~ 6247049 (+)
G68686 LOC106586545,LOC106582186 non-coding upstream 1257927 6204178 ~ 6206576 (+)
G68904 NA non-coding downstream 143428 7625988 ~ 7626404 (+)
G68982 NA non-coding downstream 391967 7874527 ~ 7874742 (+)
G69006 NA non-coding downstream 532184 8014744 ~ 8015003 (+)
G69023 NA non-coding downstream 650728 8133288 ~ 8136210 (+)
G69206 NA non-coding downstream 1251763 8734323 ~ 8735939 (+)
G68848 NA other upstream 47909 7413640 ~ 7416594 (+)
G68830 NA other upstream 115036 7346195 ~ 7349467 (+)
G68475 NA other upstream 2812539 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 3332785 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 4754174 2706840 ~ 2710329 (+)
G69406 tgfbrap1,LOC102780916 other downstream 2520498 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 2665419 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 5763749 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 6172678 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 6707004 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032895 tbc1d23 coding NC_007117.7 CM002890.2 28914233 ~ 28943056 (-)