AMCG00014276 (LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730)


Basic Information

Item Value
gene id AMCG00014276
gene name LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7402152 ~ 7411890 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014276
CAGGCTGCAAATGAAGCCTCCACCCTGGGCTGGGGCACCCGAGTGAAGGGCTTCTGCATCTGCTTCGGGCTGGGGGTGCTGTGCTCGATCCTGGGGACGTGCTTGCTGTGGGTCCCCCGGGTGGGAATCATTCTGTTTGCTGTCCTGTACACCTTCGGGAACATCGCCTCCCTCTTCAGCACCATGTTTCTGATGGGCCCTCTGAAGCAGCTGAAGCGGATGTGTGAGCTGACCCGGGCACTGGCCACTGCAGTCATGCTGAGACGCGATAATAAAGATGTTCTCCATGTGCCTGAAGTGAAGCCCCTCGCGGTCTGCGGCCCGGTGCCCAGCGCCAGGGCCCGAGGCCGAGCCGGCCCACCCGCTCCAGTCACTCCAAACCCTCTCCCTGCTTTTAGGATGGTAAAGCACCTACTCAGATACCTGGCAGGTAGAACCAgcggggggggagaaaaaaacaacaaaaaaatcagttcCAATAATACTACAGGTGCCACTTAATTTGGAGCATCCTTGACCTTTTTCGGCACAACAATTTCAATCCATTCCCACCACTCTGCGGTCTTGAATGCCTtccaaaaacataaaagcacaaACAGGCTGCTGTGTCTCTGGGAGGTGGGCGGCCCGGCGGCGCCTCTGCTGCCAGTCCTCTCGGCGAGCAGGGTTCGGGTTTGGGGGGGTTTTGTCACGGTGCGGCttcgtgtctctctctctctctctcactcggtCCTGAACTCTCCTTCCTGCTGTCCTGAATGTAGACCACAGAGTTCTAGTGACTGTGCCTTCCTACTGTATGCTCCCGGCGTTTCACGGGAGCCGGGGGCGTCACGGTCTCACTCACTGTGGGGTGAACTGTGACACTCTTGTCCTTAATTTATGCCTTAATGCTGCTGGGGGCGGTGGACTCCGCAGCGCGTAGTCGGGGGGTCTTAGCTGGCAGGTGTATTTGTGTTATGGTCTTATGCGAGGGTGAGGAAGGCTGCTCTCGGGGGTGGATTGGGCGGGGACGTGGGTGAGCTCGCTGGGTGTTGACGAAGTTCGGGAAAGGTTTTGGTTTGTGGTTCCTGTGACTAGTGTTCCTCCCTCAGTTTGCCTTTTCAAAGTTCCCTCTTCTGATCGCCTTGGATCGTTcggctcctctctctctgaccaGAGCAACTTTGCACAGCATTCAAAGTGCTCCTACATTTTGGTAGATGAGTCAcgatgtttgttttcttttcttgagaAACTGTTTtaagttgttattttgttgctaacttaatttttaaaacctAAAGTATAGGAagtttactttttatatatacagctctggaaaaaattgagaccactccaagttcagagatcaatgttaagtggtctcttcattttttccagcgctgtataggtgtgtgtgtaaacatacatacatacttccATTAAGTGATAGTGTAATTCTGATTGTCACTGTCTTAACCTTTGatatgtcttttctttttttgttcgacctttaatatacatttagatATTGCTGAAGATGTCTGTCTTTTAAGCTGGTTGTGTCTGCAGTCCACTTGTGAGACGACAGCGCTGATAGTCAGACTGGGAAACATTGCCGCAGCTCTTAGCAATAGGACACTTAATACACCAGCTATAAACGACTGATTTATCCTAGATTGTgtagagaaaaagaaaacgcaTTCCAGTGAACTGTGTATCTGCCTGCAGTTTGCCTTCAGCCTGGCTCCCCCAcgcctctgtgtgtctgtgagccTCGTGTCTGCCTTAACTTTGAACATACTTTGAAATGAGCAAAAATCATCCAAAAGTGTCCTTGTTTCTGCACTTGTTTAGCTACGGGATATTGTCATGATGATGtcaatgttatgtttttaatatgtccAATAAACTGCATATGTATATACCTGAA
>TU86069
CAAAGGCTGTTCAAATGTGAAAACGACACAACAGGGAAGCGAAGCAAGCCCTCGCAGGTGTACGATCCTTTCCACTGTCTTTTTCTCTGCCAGGATCTTGTACGGACTGAGCTGATGAACTGGTTTTCTTTGATTATAACCAAACCTATGCAAATTTAGTAGAGAAATAAGGTTAAAACTTCAAAAGAAccaacacacatatatatttgtattctataACAAGGAGTGACTCTTAAAAACTTTGCGTAGGGGACTCTTGTTTCCCTGTGTTACCCTGTGTTTGTGAGCTGGTGTGGTCTGCAGGGATGGTGTGGTTTGGCGCTGAGCGCCCGTGTCTTTCTCTCCTGACGCGCAGGCTGCAAATGAAGCCTCCACCCTGGGCTGGGGCACCCGAGTGAAGGGCTTCTGCATCTGCTTCGGGCTGGGGGTGCTGTGCTCGATCCTGGGGACGTGCTTGCTGTGGGTCCCCCGGGTGGGAATCATTCTGTTTGCTGTCCTGTACACCTTCGGGAACATCGCCTCCCTCTTCAGCACCATGTTTCTGATGGGCCCTCTGAAGCAGCTGAAGCGGATGTGTGAGCTGACCCGGGCACTGGCCACTGCAGTCATGCTGGTGTGCTTTGCTCTGACACTCTGCGCTGCATTCTGGTGGAAGAACAAGGGCCTGGCGCTGCTCTTCTGTGTTATGCAGTTCTTGGCTTTTGCCTGGTACAGTATATCCTACATACCGTTTGCCAGAGACGCGATAATAAAGATGTTCTCCATGTGCCTGAAGTGAAGCCCCTCGCGGTCTGCGGCCCGGTGCCCAGCGCCAGGGCCCGAGGCCGAGCCGGCCCACCCGCTCCAGTCACTCCAAACCCTCTCCCTGCTTTTAGGATGGTAAAGCACCTACTCAGATACCTGGCAGGTAGAACCAgcggggggggagaaaaaaacaacaaaaaaatcagttcCAATAATACTACAGGTGCCACTTAATTTGGAGCATCCTTGACCTTTTTCGGCACAACAATTTCAATCCATTCCCACCACTCTGCGGTCTTGAATGCCTtccaaaaacataaaagcacaaACAGGCTGCTGTGTCTCTGGGAGGTGGGCGGCCCGGCGGCGCCTCTGCTGCCAGTCCTCTCGGCGAGCAGGGTTCGGGTTTGGGGGGGTTTTGTCACGGTGCGGCttcgtgtctctctctctctctctcactcggtCCTGAACTCTCCTTCCTGCTGTCCTGAATGTAGACCACAGAGTTCTAGTGACTGTGCCTTCCTACTGTATGCTCCCGGCGTTTCACGGGAGCCGGGGGCGTCACGGTCTCACTCACTGTGGGGTGAACTGTGACACTCTTGTCCTTAATTTATGCCTTAATGCTGCTGGGGGCGGTGGACTCCGCAGCGCGTAGTCGGGGGGTCTTAGCTGGCAGGTGTATTTGTGTTATGGTCTTATGCGAGGGTGAGGAAGGCTGCTCTCGGGGGTGGATTGGGCGGGGACGTGGGTGAGCTCGCTGGGTGTTGACGAAGTTCGGGAAAGGTTTTGGTTTGTGGTTCCTGTGACTAGTGTTCCTCCCTCAGTTTGCCTTTTCAAAGTTCCCTCTTCTGATCGCCTTGGATCGTTcggctcctctctctctgaccaGAGCAACTTTGCACAGCATTCAAAGTGCTCCTACATTTTGGTAGATGAGTCAcgatgtttgttttcttttcttgagaAACTGTTTtaagttgttattttgttgctaacttaatttttaaaacctAAAGTATAGGAagtttactttttatatatacagctctggaaaaaattgagaccactccaagttcagagatcaatgttaagtggtctcttcattttttccagcgctgtataggtgtgtgtgtaaacatacatacatacttccATTAAGTGATAGTGTAATTCTGATTGTCACTGTCTTAACCTTTGatatgtcttttctttttttgttcgacctttaatatacatttagatATTGCTGAAGATGTCTGTCTTTTAAGCTGGTTGTGTCTGCAGTCCACTTGTGAGACGACAGCGCTGATAGTCAGACTGGGAAACATTGCCGCAGCTCTTAGCAATAGGACACTTAATACACCAGCTATAAACGACTGATTTATCCTAGATTGTgtagagaaaaagaaaacgcaTTCCAGTGAACTGTGTATCTGCCTGCAGTTTGCCTTCAGCCTGGCTCCCCCAcgcctctgtgtgtctgtgagccTCGTGTCTGCCTTAACTTTGAACATACTTTGAAATGAGCAAAAATCATCCAAAAGTGTCCTTGTTTCTGCACTTGTTTAGCTACGGGATATTGTCATGATGATGtcaatgttatgtttttaatatgtccAATAAACTGCATATGTATATACCTGAA

Function

NR:

description
PREDICTED: vesicle transport protein SFT2B-like

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014276 False 1915 mRNA 0.49 4 7402152 7411538
TU86069 True 2392 lncRNA 0.49 7 7402152 7411890

Neighbor

gene id symbol gene type direction distance location
AMCG00014277 NA coding downstream 4383 7387618 ~ 7397769 (-)
AMCG00014270 LOC102779158 coding downstream 25229 7367394 ~ 7376923 (-)
AMCG00014269 LOC108441420,LOC107582737,LOC107726519,LOC106592197 coding downstream 36412 7347452 ~ 7365740 (-)
AMCG00014268 chmp2b,LOC108435168 coding downstream 147796 7240284 ~ 7254356 (-)
AMCG00014265 NA coding downstream 308839 7077039 ~ 7093313 (-)
AMCG00014279 NA coding upstream 13238 7425128 ~ 7425676 (-)
AMCG00014275 NA coding upstream 14331 7426221 ~ 7436106 (-)
AMCG00014280 NA coding upstream 157421 7569311 ~ 7580100 (-)
AMCG00014284 NA coding upstream 256663 7668553 ~ 7675258 (-)
AMCG00014287 NA coding upstream 319124 7731014 ~ 7751865 (-)
G68829 NA non-coding downstream 61597 7340351 ~ 7340555 (-)
G68827 NA non-coding downstream 112715 7288936 ~ 7289437 (-)
G68826 NA non-coding downstream 113817 7288063 ~ 7288335 (-)
G68774 NA non-coding downstream 343833 7054777 ~ 7058319 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding downstream 347846 7053931 ~ 7054306 (-)
G68867 NA non-coding upstream 28610 7440500 ~ 7441172 (-)
G68874 NA non-coding upstream 44088 7455978 ~ 7459889 (-)
G68875 NA non-coding upstream 53519 7465409 ~ 7465662 (-)
G68905 NA non-coding upstream 214095 7625985 ~ 7626375 (-)
G68981 NA non-coding upstream 462263 7874153 ~ 7874358 (-)
AMCG00014271 NA other downstream 15168 7378088 ~ 7386984 (-)
AMCG00014241 NA other downstream 1293794 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 1723653 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 4007398 3385757 ~ 3394754 (-)
G68088 NA other downstream 4573008 2825562 ~ 2829144 (-)
AMCG00014278 NA other upstream 1839 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 723013 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 744042 8155932 ~ 8158590 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 971395 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 1893349 9305239 ~ 9317167 (-)

Expression


Co-expression Network