AMCG00014278


Basic Information

Item Value
gene id AMCG00014278
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7413729 ~ 7423291 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014278
ATGAAGAAGCAGAGCAGCCATCCCCGCAGCTCACAGGCACGGGGTTTCTGCCCCCTGTCTGTGGGGCCGTTGAAACCACAGGCTTCAGTGTCTGCCTGGATGCTGGCAGAGCAGTTCGTGCCTGACGGGCCGTGGCTGCGGCTCTACAACACCGAGGAGCAGCACTGGGAGCGGCTCATGAACTGGCAGCACGCCACCATGTATCTGTTCTTCGCCCTGGCGGGAGGTGTGGCTCTGGCCGTCCACACCACTGGCTCCGCCCCCATCGCCCTGGACCGCCTGCTGCTCGCCATCGCCTTCTTCACCGAGGGGTTCCTGTTCCTGTACCACCTGCACGGTCGGGCGATGCTGGACGTCCATGTTCACCAGCTGCTGCTGTACGCGGTGTTCGGCACGGCGCTCACCGCCTTCCTGGAGATAGGGCTCTTGCGGAGCTGCGTTGTGGTGGAGCTGCTGACGGTgccctactctctctctctccagatcgGATTCGTGCTGTACCCCCCAGGAGGGCTGGCCAAGTGGGACCTGATGGATCACAACAACATGATGTTCATCACCATGTCGAAATGTGTGTTTCAGTCCCAGGTGTCTCGCAGCCAGACTGTCCTCCGAGACGCGGAGTAG
>TU86070
cagatcgGATTCGTGCTGTACCCCCCAGGAGGGCTGGCCAAGTGGGACCTGATGGATCACAACAACATGATGTTCATCACCATGTGTTACTGCTGGCACCTGGCCCTCGCCCTGCTCACCGTGGCCCTGGTCTATTGCACTGTGTGCTGGGTGGCACGGACGCGGCTGCGGAGGACACCCTCGGTGGAGATGGGCCTCCTGAAGACAGACAGGGACCTGGAGTCTGAGGATGAGATGTAGCCGCCCCCTGCCCATCCTCTCCCACTCGCCTCACCGCCACCGGACCAGAGGGAGACTGGGAGAGGCGGGGGTAGGACCAGGTCTTCCCTGTCAGTGTTCCCAGGGGGCAGGACACAGAAGCACATCTTTCCTGGGGGTGGAGAACCTCCTGACCACACCCAGACCACCACCTGGTGCCTGACCGTGGTCCCACTGTGCCCAAATGAGTCTGATTTGTTGTATAGTATCTAATCCTCTCCTTGTTGGAGAACGACAATGTGAGACAATTATTGTGTCCAGTTGCCATCTAGTGGGGAATAGCGGAATTGCAGATGAATGTGCCTTCAAAAAGTCGCCATGAAAACCAGTGCCTATACTAGGAAGTGTTCGCATCCCTTGGACTTCTCACATTGGTCACATTGTTGTTTTACAACCtgaaaatgtgatgcatttaaatgtgaaatgggCCAAGAGGACTGAATACTTTCTATAGGAACTGTATTATACAGTTCTCATTAGTAAactatttgaaaaataattaaaaaagctaaATCAAGAAAGAGACCCATTTTATAAAGGGAAAACAATCAATTTCAGTGTATGTTCACAAGCGCTGGAGCTCCCGTCTTCAGTCGAGTGATTGTTTGATTGTGTGTCAGTTGTCCTGCGCTGCTCAGCACTATTCCAGACGGCTTGCGTCCCGTGCGATGGAGCTGTGTACTTCTGGTGTCAGTCCTGCTCTTAGACAGGGCTCAGTGCAGTGGGCAGGGTGAGATACGGGTCCCTGTGTGTCTCCGTTTGCACAGGGGCACCGCTTTTTGATCCAGTGCAATTTCAGCTGTTTTCTCTCCAAGTAAAGCCCGGCCCCAGCTCCCAAACCAGGATTGATTTATTCTGCATCTGTATTCTCTCTGGCTCAATTTGTGCCTTCAATCGTCTCCGGCCACTAGTCAGGGAATCGGCAGCGCTTTTCACTCTGGAGACTAACCTTTTGCTGTGGATCCCCCCTGTATGTATAGTCAGTAAAGGTAGAGTAGCTGTCCCTACTCTTATTAAAGCCTCTCCCGCTGCACAGCCGCCCTCCCGCTCTGACAGACCACACACAGAAGCACAAGATAGAGGCTCCCTGTCGGTCTACAGGACGTGCACtgtaatgaacaaaacaaacaaacaaacagaaagcgTCTGTACTGCAGAGTGGATCTGAAGCACAGATGACATTGCACTGCACAGCGATGTGTGCTCGGGGGGGTAACATCACTGCGGCATTATTCTCACCTCATATGTGTCTCAACCAAAAAATAACCAAACTACAGCCTCACACAACACTGCCAGAATGAAGTGCGTCAGCTGGGACACGGTTCTGCACTGCAGTGTGGAAGTGATCTGTCCTGGACCTGAACGGCTACGGCGTCTCCTGCCTTCACTCTCAAAGGCCCAGTTGAAGCGGCCGCCAGTCGAAACGCTTGATCCGAATGATCAAGGCTCTGTGGACATGGGCAGATCCAGCGTTCTCTAGCGtttctttttaaaggaatccGTTACTTTGAATTATTctgtacagaaagaaaaatcGAAGCTTGAAAATGGTGACAACGAAAGggaagattttttaaataagaaaatatatatatttttctctttgttttttcttttctgaactgtatatttaatgtttatagcTAAGGATCAAGAAGTAGagatttatttaacagaaaacatatCTTGTTATCTCTGCCAGTTATAATCGGTGGAATTCTACTTTTATAATGTTGAGTTGTGCACTGGCCAATAGACAGGGGTGAGTTTGAACagaagagagacacaaacatgtCAAACACAATCCAGGTACAGCCCCAGTCTGGCGATAAAGTGGTACTGCAAACTGTGTGTCTTGActttgtctctgtgtgaagCGAAATGTGTGTTTCAGTCCCAGGTGTCTCGCAGCCAGACTGTCCTCCGAGACGCGGAGTAGGAAATGATCCAAAGGGAAGTAAATTAACTTATTtcaggtattattattattattattattattattattattattgaattggGGTACAAAGGGAATCCTGTGAAGTAAACCAGTAGTAAGTCCCTACTAAGTCTCTTCCCGCTCCATCACCCGCGCGGCGCCAGCCTGGCCTCCATCTCTCTGCTCCGTGCTTTCCGTGTTTATTCCCTCTGCACGGGGGTTGAGACCGAGGTTCTGTTCACAGTGTGCAATTGTGTGGAAACTTGAATCAAactacagtgtttttgttttgttttactgagcT
>TU86071
AAACACCGCCGGGTGGGCCCGGTCCCCCGCCGCCCTGGCCAATCCCGGCGCCGGTGGGAAGAGCCTGCTGCACAATCAAAGACCAAGTAGCCCTTCAAATACTGTCTTTAAGTCGTGTCTTTGCGCTTCTGGCAGACGGGTGGGATGTGGAGTAAGTGTTACCAatattgactttttatttatctCGTTTTCTGGCGGACCTCCACTGTGACGACCGACAGTCCAGACAGGGGTGTTTCAGCTGCCCGGGAGATGCCCTAGCTCGGTCAGAGGGGCTGCCCTGCTGCGCCGGTGACGTCACTTTTGCCACAACTCCAGACTGGGACTTTATTTTCCAGAGCAGAAGAAAGGAGTGACTGCCCCGCTgatcagacagagagaggGAGCTGAGACAAGAGGAGCCATGGGGAACTTCAAGGGCCACGCGCTGCCTGGGAGCTTCTTCCTGGTGGCGGGGCTGTGGTGGGCCGGCAAGGCCTCCTTCTGGCATGTGGCACGCAGGGGCAGGGGCACAGCGCCTCCTTTGGCCAGCCGGGTGGTGCAGCGCCGCCTCGAGATCCTGGAGGCCTCCGTCACTGTGGCTTTCTCTGTGATCGGGATGCTGGCAGAGCAGTTCGTGCCTGACGGGCCGTGGCTGCGGCTCTACAACACCGAGGAGCAGCACTGGGAGCGGCTCATGAACTGGCAGCACGCCACCATGTATCTGTTCTTCGCCCTGGCGGGAGGTGTGGCTCTGGCCGTCCACACCACTGGCTCCGCCCCCATCGCCCTGGACCGCCTGCTGCTCGCCATCGCCTTCTTCACCGAGGGGTTCCTGTTCCTGTACCACCTGCACGGTCGGGCGATGCTGGACGTCCATGTTCACCAGCTGCTGCTGTACGCGGTGTTCGGCACGGCGCTCACCGCCTTCCTGGAGATGTTCCTGCGCGGCAacctgctgctggagctgctgcggGCGGCGCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014278 False 627 mRNA 0.62 5 7414033 7421714
TU86070 True 2501 lncRNA 0.48 2 7413729 7416515
TU86071 False 966 TUCP 0.63 4 7417598 7423291

Neighbor

gene id symbol gene type direction distance location
AMCG00014277 NA coding downstream 15960 7387618 ~ 7397769 (-)
AMCG00014270 LOC102779158 coding downstream 36806 7367394 ~ 7376923 (-)
AMCG00014269 LOC108441420,LOC107582737,LOC107726519,LOC106592197 coding downstream 47989 7347452 ~ 7365740 (-)
AMCG00014268 chmp2b,LOC108435168 coding downstream 159373 7240284 ~ 7254356 (-)
AMCG00014265 NA coding downstream 320416 7077039 ~ 7093313 (-)
AMCG00014279 NA coding upstream 1837 7425128 ~ 7425676 (-)
AMCG00014275 NA coding upstream 2930 7426221 ~ 7436106 (-)
AMCG00014280 NA coding upstream 146020 7569311 ~ 7580100 (-)
AMCG00014284 NA coding upstream 245262 7668553 ~ 7675258 (-)
AMCG00014287 NA coding upstream 307723 7731014 ~ 7751865 (-)
G68829 NA non-coding downstream 73174 7340351 ~ 7340555 (-)
G68827 NA non-coding downstream 124292 7288936 ~ 7289437 (-)
G68826 NA non-coding downstream 125394 7288063 ~ 7288335 (-)
G68774 NA non-coding downstream 355410 7054777 ~ 7058319 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding downstream 359423 7053931 ~ 7054306 (-)
G68867 NA non-coding upstream 17209 7440500 ~ 7441172 (-)
G68874 NA non-coding upstream 32687 7455978 ~ 7459889 (-)
G68875 NA non-coding upstream 42118 7465409 ~ 7465662 (-)
G68905 NA non-coding upstream 202694 7625985 ~ 7626375 (-)
G68981 NA non-coding upstream 450862 7874153 ~ 7874358 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 1839 7402152 ~ 7411890 (-)
AMCG00014271 NA other downstream 26745 7378088 ~ 7386984 (-)
AMCG00014241 NA other downstream 1305371 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 1735230 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 4018975 3385757 ~ 3394754 (-)
AMCG00014297 NA other upstream 711612 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 732641 8155932 ~ 8158590 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 959994 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 1881948 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 2577843 10001134 ~ 10017751 (-)

Expression


Co-expression Network