AMCG00014289 (tspan7,tspan7b,LOC107704418,LOC107745974,LOC107593043,LOC107586946)


Basic Information

Item Value
gene id AMCG00014289
gene name tspan7,tspan7b,LOC107704418,LOC107745974,LOC107593043,LOC107586946
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7845556 ~ 7855351 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014289
ATGgcctcctcccctctcctgcaGATTACGGGTGCGATCCTCCTGGCCGTGGGAGTATGGGGCAAGCTGACCCTGGGGACATACATCTCGCTGATCGCGGAGAACTCCACCAACGCCCCCTATGTCCTCATCGGCACGGGCACCACCATCATCGTCTTCGGGCTCTTCGGCTGCTTCGCCACGTGCCGCGGAAGCCCATGGATGCTGAAACTGTATGCCATGTTCCTGTCTCTGGTGTTCCTGGCTGAACTGGTTGCTGGCATCTCGGGCTTTGTGTTTCGTCACGAGATCAAAGGCACAATCCTGAGGACGTACACCGATGCCATGCGGAACTACAATGCTAAGGATGAAAGGAGCCACGCTGTGGATGACGTCCAGCTCAGTCTGCACTGCTGCGGCGTGCAGAATTACACCAGCTGGTTCAGCAGCAAGTACTTCCCCGAACACGGCATCCCACCCAGCTGCTGCGCCAACGCTTCAGACTGCAGCCCCCAGGACCTGCGCAACGCCACCATCGCCCCCAGCAAAGTCAACCAGCAGGGCTGCTATGAGCTGGTGACCAGCTTCATGGAGACGAACATGGGCATAATCGCAGGAGTGGCGTTTGGGATTGCCTTCTCACAGTTGATTGGCATGCTCCTGGCCTGCTGCCTGTCGCGATTCATCACTGCCAATCAGTACGAGATGGTGTAGCAGAGAGAGCGTGGGGAAGACGAAGAGAAGTCATTTGTCATCGTGGACGACTGGGAGGACACTCCTAGAAGACTAGCACACTCCATTCTTACTTTCTCTCTTCTTTTAACTATCGTAGTGCATCATTCCTTAACGTACAGCTGTGCCATGACAACAAGTTTACTTTCGAAACGTCTACCTTAACTTTTGTCTCTTAAATGGCGGGATTAATGTATCGACTTTGATAGCCACAACAAGACCTAGCTCCCATTGACAGCACCATTGTGGATGTGCATGTAGTGTATGGACTGTATAGTAACCATTAACAATTTGTAAGCATTAACAGCATTTCTATAaagagaacacacacactcacacatatatatgtttatatataccgtaaaacttccaataccTGCCGGGTCATAAATAGCAgctggaaaacagaagctggGCTCTAATAAACGCCGGGTTGCCCTCTTGTGCTTTACTGCTGTTACAAAAGAGACTTGACAATGTCtgataaataaaggaaattgaTACAGTTTGTAAAGATGCATTAATACAATTGAAAGAACATGTTTacgtaaacttttatttttagtttttgcatctttcttgttttcagtaaatatatataccgttcatataaaaaaacaccatcacgtgtgtttttattaatgtatttctcactatatatatatatata

Function

symbol description
tspan7 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 58. Orthologous to several human genes including TSPAN6 (tetraspanin 6).
tspan7b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in basal plate midbrain region; nervous system; notochord; and pancreatic bud. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 58. Orthologous to human TSPAN7 (tetraspanin 7).

NR:

description
PREDICTED: tetraspanin-7-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06571 TSPAN7, TM4SF2, MXS1, CD231; tetraspanin-7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014289 True 1381 mRNA 0.47 7 7845556 7855351

Neighbor

gene id symbol gene type direction distance location
AMCG00014288 NA coding upstream 50174 7783729 ~ 7795382 (+)
AMCG00014285 NA coding upstream 115665 7713389 ~ 7729891 (+)
AMCG00014283 NA coding upstream 181027 7659468 ~ 7664529 (+)
AMCG00014282 xk coding upstream 192010 7645418 ~ 7653546 (+)
AMCG00014281 lancl3 coding upstream 203021 7637821 ~ 7642535 (+)
AMCG00014290 NA coding downstream 144739 8000090 ~ 8003278 (+)
AMCG00014292 NA coding downstream 265024 8120375 ~ 8127095 (+)
AMCG00014294 NA coding downstream 272853 8128204 ~ 8131793 (+)
AMCG00014293 NA coding downstream 305057 8160408 ~ 8161280 (+)
AMCG00014299 slc9a7,LOC107673530 coding downstream 349471 8204822 ~ 8250935 (+)
G68904 NA non-coding upstream 219152 7625988 ~ 7626404 (+)
G68771 NA non-coding upstream 787237 7056707 ~ 7058319 (+)
G68738 NA non-coding upstream 1101445 6743863 ~ 6744111 (+)
G68728 NA non-coding upstream 1130735 6713171 ~ 6714821 (+)
G68698 NA non-coding upstream 1598507 6244902 ~ 6247049 (+)
G68982 NA non-coding downstream 19176 7874527 ~ 7874742 (+)
G69006 NA non-coding downstream 159393 8014744 ~ 8015003 (+)
G69023 NA non-coding downstream 277937 8133288 ~ 8136210 (+)
G69206 NA non-coding downstream 878972 8734323 ~ 8735939 (+)
G69232 NA non-coding downstream 1035235 8890586 ~ 8890834 (+)
AMCG00014272 tbc1d23 other upstream 362996 7464503 ~ 7482560 (+)
G68848 NA other upstream 428962 7413640 ~ 7416594 (+)
G68830 NA other upstream 496089 7346195 ~ 7349467 (+)
G68475 NA other upstream 3193592 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 3713838 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 2147707 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 2292628 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 5390958 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 5799887 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 6334213 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020954 tspan7b coding NC_007133.7 CM002906.2 11440705 ~ 11493236 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_07296570_07302079 TSPAN7B, TSPAN7 coding CI01000030 null 7296570 ~ 7302624 (+)