AMCG00014291 (LOC107586940)


Basic Information

Item Value
gene id AMCG00014291
gene name LOC107586940
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8020985 ~ 8060018 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014291
GAGCGACCACGGGAGACAGAGGCCGGGCTAGAGCGGACGTCATGCTCTCCGCAACACCCCTGAAAGTGCCTGTAACCGATGGCGAATCCCAGAAAAACAGGTTGGAATTGAGAGAAGACAGTCACCTGACGCCAAGCATGGTGGATGCTGGAGCGGCGTGTAGGATGAACACGCTGGCGGCTCTCAGCATGGACCGCAGCGGCCTGATGCGGGAGAGCCTCCGGGTGCACGGTGGCATGGTGTACCCGGGCATCCGAGCGCTGTCTGCCGACAAGACGAGGGACGGATCCGGAATGCCCCTGGGCTACATCAGCGACCGCATGCCGGAGCTGCGCTACAAGCCCGCCGAAGTCACACTGGAGAACCGGAAGCCGCCTAATGGCTACGGCGGCCTCTATAAGAGCCCTCCTCCCGGGCTGCAGAAACCGATGATCGTCCCCGGAGGCGGAGCAGAAACCCTCGGGCTGGACCGCCGAGTTGGGCCCGGTGATAAGGCATCTGAGCTGGGTCTGAATGGCAGCAGTAGCTACCTGCGCCTCCCCTGGGTCAGCCCGTACCCTGAGGCTGGGGTGTACCCGTTCCTGGATTCAGCAAAGTATGCCCTGAACATGTATAAGGCCTCCTTTCTGTCCCAGCATTCCCCTTACTTGCCCCAGCCGTTGGCCTACCAGTCTGTGTGCGCTGGTGCCGGGGGCAGTGCTGCTGGCAGTGAGCGCTTTCTCTACCTGCCCCCTTACCCTCCTGCCCCCATGACCTCTTCACTGGCACCCCCGATGAGGATCCCTACCGCCACCGTGGCCCCCACGCTCTCCCCGCTGTCCTCGGCTCACATGGAGAGCCCTTCGGACTTCCAGAAACCATTGCCCAGAGGGCCTCCAGTTTCATCCtcctctgctctctcctcctcctccccctcggTGTCCCTCCCTTTCTCCTATATGAGCACCTTGGCTCCAGAGCACCCTTCGCCGGTGCGGCCTACCAGCCATAAGTCCAAATCCAGGGAGGGGACAAGCGAGCACAGAAGTAGTGGAGGGGAGAGGAAAGCCAGCAAATCTCCTTCCAAGACGACGTCAGAGAAGCAGCCCCACCAGGCTCCCGCCAAAGACCCTGCAGATAAGCCTTTGGATTTGTCTGCTAAAATGGCGGGCTTTGGAGTCCCTCCCAATGGATTCCCCCCCAAACTTGAAGGCATTGCCAAAATGGGACAATCTCCGACGCCCCGATATGGGCCTCCCAACCTGGAGCTTCTTAAAGAGACTTTATCCCCTTCCTATCCTGGGGTCAGCACTTCCTCCAAACCTCAAGAGAGGCCAGAAATAATCAGCACTTTACACTCCTCCTGGGTGGTGCCGGGCCCCAATCCACTCACTCCCGACTCCAGCCAAAACAAGGGCACCTccgtaattaaaaacaagactCTAGAACGCGTAATGCCCCAGCAGCGTAGCTCCTCCTGCCCCAGGATTGGGGAGTCCAACAATAGCCCTGCCCCCAATCCTGCCCCAGCCGTGGTGCCTGCTTTGGGCCGCCCAGCCTCTGCTTCCCCCTCTCCCAATATCAATGGCGAATGGCCCAAGGCAAATCCCAGTCTCCCAGAAAAAGTCCCCCAGCCCAGTCACATCAGCAGCCAGCCGTCCTCTGGCAAGCCGGCAAAAGCCCCTAAAAGAGCAGAGACCCAGGAAATCATCCATAAACCACCCCAGCAGCATCATGAGAACGGGCACACTCCCAGCCCCCTGTATTTACCACAGAATGAGGCATTCCTGCCTCCAGCTTTGGCGTACGCCAACAGATACTTGACATACTCTGTCCCAGAAGGCCTGCCTATTCCTCATTTACCTCTGCCGGGGAAGGGCCCTGTTTACCCCCATCCAGTGTTGCTGGGCAGCAGCAGCCTGTACCCAGCTCGCCTGACTCCAAAGCACGGCCTTCCGTATGGCCTGCCCTCTGGACGTGGAGAGTTCCTCACCTATCACGACTCTCAGGAGATGGTCCACCCCTTGATGTCGCCCCATCTCACTCTGGACCCCAAAGTGAACGAGAGGCTGGAGCGCAAGTCCAGGTCCCAGGACCGACCTCGACATAATGAGGATGCCATTCCCAAAATCCGACACCCAGCGGAAGCCGCAGATCCTGCTCCCAAGCATGAGAGGGAATCTGAAAAGCTGGCGAGTCAGGGAACCAAGCCACAGAGCAAGCCGCTGGCAgtggagaaagagaaaatagtttGTATTGACTTGATCCAAGATGACACAGATGGAGCCTCTCAGACGATGAAACACAGTGTCCCCAGTGCCAAGAAAGGAGATGCCACCAGGCCACTCGGCAGCAGTATCTGTGGCAGCAGCACCGGCACTAGTGAGGGGAAAGAGCCAGAGCTAAAGCAGCTTCTTCTCTCCATCCAGGCTGTTGCTCACAGGCCAGCTGAACCTGAGAAACAGCCAGAGATGTGCAGCCCACCCAAGCTGCTGGAGCAGAGCTACCCAGTGCCCAGTCTCTGCAGGGAGTACCTCTCCCCGCGACAGGACCAGGGCCAGGGGAGCCCCGCTCAGCCCGCGTCACTGCCCGAACTCCTGGAGCTGCAGACTCTGCGCTGTGCCAGGACGTCCGGGGACAGAGGCGTGGAGGACACCGAATTCAAACACGAGAGTCGAATGTTCGGACTGGCCCGCTCCATTGAGTTGGGCAAGGAGCTCCTGGACGATGGGGAGACCCAAGACGAGGACGAGGATGAACACGGCTCCTGCAGGTCCAGGAAGTCCAACCTGACCAAGAGGATCGCCAACTCGTCCGGCTACGTGGGCGACCGCTTCAAGTGCGTCACCACGGAGCTGTACGCAGACTCCAGCAAGCTGAGCCGGGAGCAGCGTGCTCTGCAGCGTGCAATGATGCGCTTCTCCGAGCTGgagctgaaggagaaggagggTAGTGGAGCGACGGGAAGAGACCTGGCAGACGGCCAGCCCGGCGTGAGCGACTGGGAGGGCAGCGAGAAGACCGCCAAGCACGGGGGCAGTGCCCTGAGGGAGGAGTGCGAGCGGGACGGTGTGCTTCCTGTGTCTGGAAACCACAAGAGCTGCCTCCCCCGCAGCCCCGCCAGAGAGCGCGAGGACCGGCCTCTCGCAGAGCACGAGAGGCTGAGGGAGAAGGAGCGGGGAGAGGGGGATGAGGAGGAGCGGGAGGCAGGCTGCGTGGCCCCGGGGGAGCAGCCTCCATGCTCACAGGCGGCGGAAAGGCAGCCGAGCCAGCCGAGAGAGGAAGTGAGCCCAGGCGCTGGGCCTGTGCCGGCCAGGAAACGCAAACACAGCAAGGAGCGTCTGCAGGACGAGCTGCCCGGCGGCGAGGGAGGCGCAGAGGAGCCCagggaggcggaggaggaggagggggaggaggagcgCGCGGCGGCTGCCCAGGGGAAGAGAAAGAGGCTGCTGACGGATGACTGGCCGGAGAAGGAAATTACCAGCCCTTCTTATGAGCACGTCTTGGAAGAGTCCTCTTGTAAGGAAGTGAAAAACCTGAAAGTGTGTATCGAACTGACCGGCCTGCGGCTCCGCAAGCAGCCACACCTGCTCCAGCTCAGGGAGTTGTGGGAGAGGCAGGTCTCGTCTCAGAGGTCGGTGCTCGGCGGCGCCCCGGCCCCAGCCCCGCCCCCGCTGCACCCGGCCGAGCCCTGCCTGCCAGAGGTCACAGGGAAGGACAGAAAGGTCAAAGGCAGCTTGGTGGAAGAGAGGCCCACCAAGAAGAGGTCAGAGGGCAAAGTCAATAGGAGCTGGTCTGAAGAGGCGCTCTGTAAGAGTGACATTGAACAAGGTCTGGCTGCTCCTCCTCTGACCCCGCAACACAAAGGCTGCCTTGACTCGCCCCCCACAGATGAAGCAGTTGCTAAAAAGCCCCCCCAGGCAGCGACCAGGCTCTCAGACAAGAGACAGCGGCTGAAGGAGCATCGCAAAGCCAGCGGGCTCgggcccccctcccccagcgcCGGCAAGGACAGCGAGACGTCGAGTCCCCGACTGCGTAAACACACTGACCCTGAGAAGCCCAAAGGCAAACGGCAGTGCAAGACTAAGCACATCAGCCTGAGGGACAGGAGAAGGACGTCTCAGACAGCCGAGGAGAACACTGACCTGGAGAACTCGTCAGAGCAGAAGGTCAGCCTAAAGAGATCCTCTCGGAAGAGACCGGCATCTCTTCTGGACTACGACGCCTCTCCCATCGAGCCCTGCCACCCGGAGCTCCCTCCTGCTGTGTCCCAGGCCCCCACCTCCCTGCTGTCGCCCACCTCCCACCCCTCTCCGCTGCCCGTCGGCACCCCTCCTCTGGACACCCCCACGAGCCGGCCCATGCCACCTGAAGCGCGACGGCTGATCGAAGTGCTGCTGTACTGCCTGGAAAACAAGGTGTGTGATGTAAATCACCGTGACAATGCCGGCTACTGTGCTCTGCATGAGGCCTGCGCCCGGGGCTGGCTCTCCATCGTCCAGCATCTCCTGGAACACGGAGCCGACGTGAACTGCAGCGCCCAGGACGGCACCAGgcCGCTTCACGATGCTGTGGAAAACGACCACCTGGACGTGGTGCGGCTGCTGCTGTCCTACGGCGCCGACCCCACGCTGGCCACCTACTCCGGCCGTAGCGTCCTCAAGATGACCCACAGCGAGCTCATGGAGACCTTCCTGTCTGATTACTTCGCTGACCTGCAGGGCCGCGATGATGATGACCCCGGTCTGTACTGGGATTTCTACGGCAGCTCTGTGTGTGaGTCCGCCGAGGACTTGGCTGCCTTCGACATCCTGGCCAACCCGCCGGGTCCggaagaggaagaggacgaGCAGAGAGACGTGTTTGAGTTCGAGTTCTCGGACCGCCCCCTCCTGCCCTGCTATAACATCCAGGTGTCTGTCTCCCAGGGTCCCCGCAACTGGCTGCTGCTCTCGGACGTGCTGAAGCGGCTGAAGATGACGGCGCGCGCCTTCCGCTCGGCGTTCTCCCACCTGGAGGTGGCCACCATCGCCGAGGCCGAGTTCTACAAGCAGGCCTCGCTCAGCCAGCTCTTCTCCTGCCCCGAGGAGCTGGAGGCCTTCGTGCCCGACAGCAAGGAACTCTTGGACCTGGTGGAGTTCACCGCTGAGCTGGTGGCCCTGCTGGGCTCGTCTCTGGAGTGCCTGGACGACCGGTGGGACGCCGCGTCTCGGGAGCGCTCCTGACCCCACGGACTCTCGGGGGGGAGACGCGGTTTGGCCTGTTCATAGTGTACATAACCAGAGCACGGTGCGGACTGGATGGGGAGGACACTAAATCCCACCCCCTGGACAATGAGAAGAGAAGGACTTTTTAATTTAACGAttaccttgtttttattttatttttataaatatataaatatatatatataaatatttcttgttttggtctgtttttattattttataatactgCCTATTTCTTttctcctcctttttttttttttttttgtct

Function

NR:

description
PREDICTED: BCL-6 corepressor-like isoform X4

GO:

id name namespace
GO:0021915 neural tube development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator biological_process

KEGG:

id description
K23215 BCOR; bcl-6 corepressor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014291 True 5484 mRNA 0.60 14 8020985 8060018

Neighbor

gene id symbol gene type direction distance location
AMCG00014286 NA coding downstream 237983 7752906 ~ 7783002 (-)
AMCG00014287 NA coding downstream 269120 7731014 ~ 7751865 (-)
AMCG00014284 NA coding downstream 345727 7668553 ~ 7675258 (-)
AMCG00014280 NA coding downstream 440885 7569311 ~ 7580100 (-)
AMCG00014275 NA coding downstream 584879 7426221 ~ 7436106 (-)
AMCG00014296 NA coding upstream 82171 8142189 ~ 8147008 (-)
AMCG00014295 NA coding upstream 88369 8148387 ~ 8155403 (-)
AMCG00014300 LOC107585190 coding upstream 106224 8166242 ~ 8186240 (-)
AMCG00014301 rp2,LOC107753404,LOC107711097,LOC107685300 coding upstream 129005 8189023 ~ 8197625 (-)
AMCG00014302 LOC107582727 coding upstream 199709 8259727 ~ 8260980 (-)
G68981 NA non-coding downstream 146627 7874153 ~ 7874358 (-)
G68905 NA non-coding downstream 394610 7625985 ~ 7626375 (-)
G68875 NA non-coding downstream 555323 7465409 ~ 7465662 (-)
G68874 NA non-coding downstream 561096 7455978 ~ 7459889 (-)
G68867 NA non-coding downstream 579813 7440500 ~ 7441172 (-)
G69086 NA non-coding upstream 166476 8226494 ~ 8250561 (-)
G69233 NA non-coding upstream 830538 8890556 ~ 8890839 (-)
G69250 NA non-coding upstream 938408 8998426 ~ 8998626 (-)
G69352 dcaf6 non-coding upstream 1289770 9349788 ~ 9355238 (-)
G69372 NA non-coding upstream 1529806 9589824 ~ 9590081 (-)
AMCG00014278 NA other downstream 597694 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 609095 7402152 ~ 7411890 (-)
AMCG00014271 NA other downstream 634001 7378088 ~ 7386984 (-)
AMCG00014241 NA other downstream 1912627 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 2342486 5659072 ~ 5678499 (-)
AMCG00014297 NA other upstream 74885 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 95914 8155932 ~ 8158590 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 323267 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 1245221 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 1941116 10001134 ~ 10017751 (-)

Expression


Co-expression Network