AMCG00014292


Basic Information

Item Value
gene id AMCG00014292
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8120375 ~ 8127095 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014292
ATGAGGGCGGTCCTTTGTGAAAGCGTACCCATAATCCTCTGCGTCAGCGACCGAGTGCCGGAGAAGGAAGATGGAGGACTGCGGGAGTTCAAGAAGGATGGACGCTTCCCTGATGGCGGCGCTTCTGGTCTTGGTGTCTCTGTCAGCGGTTTCACAGTGTTGAAAGCCCCAAAGTATGTCAGCTTCAGGGAAGGCGAGTGGCCTGTGTCCGGGGAGAGGATCCCAGACCTCGTGGCTCTGACCATGGGCTTCTCTGTGGAGGAGGAGCTGTCGTGGCCTGGCCTGCAAGGTGGCAACCTGTTCCAGCGTCCCCAGGCCAACTTCCTCATCGTGGTGAGGGGAGTGGGCAGCCTGCCTCTGCCCCAGCCTGCAGCCTCGTACCCTGTGGAGAATGCTGTCCCATTCACCTTGGACAGTGTGGCCAACACAGTCCACACTCTCTTCTCAGAAGACACTCCTGTTGTCTTACAGCTGGCTCCCAGTGAAGAGAGGCTGTACATGATCGGGAAAGCCAACACGGTGTTTGAAGACCTCCCTGTCACTCTGCAGCAAATCCGGGGTCGCCTGTCGCAGGACAACTCCATCCTCAACAGCCTGCCGCCCAACTCGCTGAGCCGCAACAATGAGGTTGATCTGCTTTTCCTTTCTGAGTTGCAAGTCCTTCATGATATCGCTGCTCTGCTGCTGAGGCACAATCACCTGGCGAAGGACCATTCCCCTGACCTGTACTCGCTGGAGCTGGCCGGGCTGGAGGAAATCAGCCGGCACTACGGCCCCGACTCGCAGCAGATGAAGGATGCCACGCGCATCCTGGCCACCCTGCTGCAGAAGTTTGCAGATGACGTGTTCGGCATCTATAGCCGGAACGCCGTGGTGGAGGTGGTGACGGTCAAGAGCTTCGAGTCGCCCCTCATGAGGAAGTCCCGCTCCATCCTGCAGTCCATCGAGATCGGCAACCCCGGAAGCCCATATAACCTGGCCTATCGGTACAACTTTGATTACGCGGCGATCTTCAACATCATGCTGTGGATCATGATCGGCCTCGCCCTGGCAGTCATCGTCATCGCCTACAACCTGTGGAACATGGACCCGGGTTACGACAGCATCATCTACAGGATGACCAATCAGAAGATCCGCCTGGACTGAAGCATCCTCTCCTGCATTCCCTCCCAGctgatttgaaaatgaaactatttctcttccccccccaccccccgccctTTGCCAAGTAGCCTGGGTTTTAAAGTCTGGCCTTTccttttcaaaaccacaaatgtcttgtaaaaagtaaataaatgttaaatgcagtTATAGACAGTTTTTATGATAATATTATATGCACCTCAGAATAATTGAAGGTCAGTTTGGCTCATTTCACGTTACTTTCATTTACAAGGTTTAATGAAGGCTTTCTAAAactgtttactttgatttttttGTGAGAAATGCTTCACTTTtccagatgtattttttattcagttttaagtgGAGCAATGAATAAAGTAAAACGTGTATTTGTACAGATATTTATCTCTAGAAGCCCCACTTTACCCCAGGCCAGGCTACATCATTccttctgaaatgttttaagaGTGGTTGATTCTCCCTACAAATGATATTGTCCTGTGTTCGTTTTGTATGTCGTTGTTGTCGTTTTCTTTTTGGCACTGAACTAAGGAAAGAGGATCTGACGGTATgccttttctctctgtgttgtcagtgtctgtgctggGACATGTTGCAcctatataatttaattgaacagcgttagatatatgtatatattgagaTAAGTGAGATAAGTGAAGAGATTGATACGGTCCTAATATCTCTCTGCATCCCCCCCGACTTAAATATGTGCAGTTAAAACTTGGATctttcacatttaaacacaacaaactGGAACTGTGACAATGAAATCTCTGGGGgttgtttccttttttgctCTGCTTTGTTAAACAAGCTTTTGGTGGAAAACGGTCAGAAACCTCCCTTGTTCTTGTAAATCTGGGTTTCAGTCAATCATCAGTACAGTCTGAATGGAACATTGTCctcaacaattaaaaaaatgcatacaactGTTAAACTACTTTTGCTAAACCATTGTTTTTAGTTATAACTTATTTCTTCACATGTATGTGGTGAAAAGGGGTTTTTGTTTAAGTCACACAATTATATTCTGTACGGTACTGTGTTGAAATTTGATGTAAGTGGTGGTAAGAACAAAACAAGGTTTATAATTAATTAGgattaatttgcataatgaGAGTACACTCGGTATGTACTGCAGCAgtatgtgtgtttggggggaAAAGTGATGTAATGTGAAActtgtaaaatacataataaatgacTGTCCATTAA

Function

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19514 ATP6AP2, PRR; renin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014292 True 2364 mRNA 0.46 9 8120375 8127095

Neighbor

gene id symbol gene type direction distance location
AMCG00014290 NA coding upstream 117097 8000090 ~ 8003278 (+)
AMCG00014289 tspan7,tspan7b,LOC107704418,LOC107745974,LOC107593043,LOC107586946 coding upstream 265024 7845556 ~ 7855351 (+)
AMCG00014288 NA coding upstream 324993 7783729 ~ 7795382 (+)
AMCG00014285 NA coding upstream 390484 7713389 ~ 7729891 (+)
AMCG00014283 NA coding upstream 455846 7659468 ~ 7664529 (+)
AMCG00014294 NA coding downstream 1109 8128204 ~ 8131793 (+)
AMCG00014293 NA coding downstream 33313 8160408 ~ 8161280 (+)
AMCG00014299 slc9a7,LOC107673530 coding downstream 77727 8204822 ~ 8250935 (+)
AMCG00014306 cyfip1 coding downstream 136341 8263436 ~ 8321739 (+)
AMCG00014307 LOC103356925 coding downstream 215906 8343001 ~ 8382284 (+)
G69006 NA non-coding upstream 105372 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 245633 7874527 ~ 7874742 (+)
G68904 NA non-coding upstream 493971 7625988 ~ 7626404 (+)
G68771 NA non-coding upstream 1062056 7056707 ~ 7058319 (+)
G68738 NA non-coding upstream 1376264 6743863 ~ 6744111 (+)
G69023 NA non-coding downstream 6193 8133288 ~ 8136210 (+)
G69206 NA non-coding downstream 607228 8734323 ~ 8735939 (+)
G69232 NA non-coding downstream 763491 8890586 ~ 8890834 (+)
G69326 NA non-coding downstream 1239442 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 1774355 9901450 ~ 9910048 (+)
AMCG00014272 tbc1d23 other upstream 637815 7464503 ~ 7482560 (+)
G68848 NA other upstream 703781 7413640 ~ 7416594 (+)
G68830 NA other upstream 770908 7346195 ~ 7349467 (+)
G68475 NA other upstream 3468411 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 3988657 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 1875963 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 2020884 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 5119214 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 5528143 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 6062469 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_07483843_07492567 ATP6AP2 coding CI01000030 null 7483843 ~ 7492605 (+)