AMCG00014298


Basic Information

Item Value
gene id AMCG00014298
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8155932 ~ 8158590 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014298
ATGTGCATTGACTCTGAGGGCAAGCTGTGGGTGGCCTGCTACAGCGGAGGACGAGTCCTGCGGATAGACCCGGTGACAGGTGAAAGAATCCAGACGGTGAAGCTGCCTGTGGAAAAGACCACATCGTGCAGCTTCGGTGGGAAGGACTATTCGGAGCTTTACGTGACCACAGCCTGCGAGGGGATGGACCAGGACTTGGTGGTTAAGCAGCCGGAAGCTGGAGGCATTTTTAAGTGGTTGTAG
>TU86302
CTTTAACCCACTGAACTTGTCTAACTTGTGTTATAAAATACCTGTAAAGCCAATCGCAGGACTGTGTACAAGTTGGGGAAAGACGAAGGGATCCCAGATGGGATGTGCATTGACTCTGAGGGCAAGCTGTGGGTGGCCTGCTACAGCGGAGGACGAGTCCTGCGGATAGACCCGGTGACAGGTGAAAGAATCCAGACGGTGAAGCTGCCTGTGGAAAAGACCACATCGTGCAGCTTCGGTGGGAAGGACTATTCGGAGCTTTACGTGACCACAGCCTGCGAGGGGATGGACCAGGACTTGGTGGTTAAGCAGCCGGAAGCTGGAGGCATTTTTAAGATAACTGGACTGGGGGTTAAAGGAATTCCACCAAACTTTTTTGCTGGATAATCACACTTTGTGGTTTGCTGTTCTAGAAGCGTTAATGAAATGATTTAACTCGTATGACTTAAATTCAAAAAATTATAGTtacaaactattaaaaaaaaaaagtgttcctTATATAATACCTTAATTACCTTCTTAATAAATGTCTTTCCTTCACATTTATAGTCACCCAGGCAAAAGATTCATACTGGTTCATGTCATCATATCTGgtaataatgtacacattaaGCAGGGCATAAGCAATAACTGTGTTTTACTTGAACCACTGGTGTCAAATGTCCTGCATTGAGCCATAGCTGTACTGACCTGCTACCAGGAGAGGGTGAGAGTAGCCCAAACTAAACCTCATCCATCTGGCTGTAACGTTTTGGAAACAGGCTGCTGAGATTTGTAGAGAGGATCTAGTGAAACAAATCTTCAGTACTCTTCATGGTGTGTGAAAGCTGCAGTAAGGAAGGgaggtgaaaatgaaatgaaaccgAATGTGACGTGTTGAAAACTGGTGGTTAGACCGATGTGGCCAATTTATTTGGGTCTTACTGTGCCGTTGGGATGAAGTATGttattacagaaagaaaatgtatggaaTGAGAATTTTGGTAAGGAGTTAAAAAATTGTTAGAGCTTTGCTTATTGTgatatgaaatatttatatcttTCCTGGgcattaaattaacattaaatctACTGTGAATAGGAGGCCTGACTTATCAGGAAAAAGAATATTACACTGGAAAAGCTCAATAAATGCTCTATACataacaagtttttttttttttttttactgatctACAGATACTAGATAAAACACTTATTCCAGTTTCCTATTCCAGCATATTTCACTGTAACCCATTGCTGTAGCTGTTGTCTTcctctgcattttgtttcagtgccTAATGTTACATAATTTGTGTCACTGCCGTTTACTCTGTCACCTTGGCAGCTGTGTACCTTTTcgccatttttaaatgtgagtAACCTTGGACTGTGGTGTTAATATAGTTAATAGTTATAGTAATAATCATTAACGGGGAATAGACACACATTGCCAGTAGCTAGAACAATATTCTGTATGTCTTTTTATGCTGTTCGTGTTCATGTCTTTGCCACAAAGCTTGTTCACGTTGTTCATGTTGACCATTCTCGGCTCAAATAAAAGAAGCATACCATGCCAACTG

Function

GO:

id name namespace
GO:0019853 L-ascorbic acid biosynthetic process biological_process
GO:0032781 positive regulation of ATPase activity biological_process
GO:0050848 regulation of calcium-mediated signaling biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0030234 enzyme regulator activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004341 gluconolactonase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014298 False 243 mRNA 0.56 3 8155932 8158488
TU86302 True 1562 TUCP 0.40 3 8156229 8158590

Neighbor

gene id symbol gene type direction distance location
AMCG00014295 NA coding downstream 529 8148387 ~ 8155403 (-)
AMCG00014296 NA coding downstream 8924 8142189 ~ 8147008 (-)
AMCG00014291 LOC107586940 coding downstream 95914 8020985 ~ 8060018 (-)
AMCG00014286 NA coding downstream 372930 7752906 ~ 7783002 (-)
AMCG00014287 NA coding downstream 404067 7731014 ~ 7751865 (-)
AMCG00014300 LOC107585190 coding upstream 7652 8166242 ~ 8186240 (-)
AMCG00014301 rp2,LOC107753404,LOC107711097,LOC107685300 coding upstream 30433 8189023 ~ 8197625 (-)
AMCG00014302 LOC107582727 coding upstream 101137 8259727 ~ 8260980 (-)
AMCG00014303 NA coding upstream 145941 8304531 ~ 8305181 (-)
AMCG00014305 nipa2 coding upstream 163844 8322434 ~ 8326420 (-)
G68981 NA non-coding downstream 281574 7874153 ~ 7874358 (-)
G68905 NA non-coding downstream 529557 7625985 ~ 7626375 (-)
G68875 NA non-coding downstream 690270 7465409 ~ 7465662 (-)
G68874 NA non-coding downstream 696043 7455978 ~ 7459889 (-)
G68867 NA non-coding downstream 714760 7440500 ~ 7441172 (-)
G69086 NA non-coding upstream 67904 8226494 ~ 8250561 (-)
G69233 NA non-coding upstream 731966 8890556 ~ 8890839 (-)
G69250 NA non-coding upstream 839836 8998426 ~ 8998626 (-)
G69352 dcaf6 non-coding upstream 1191198 9349788 ~ 9355238 (-)
G69372 NA non-coding upstream 1431234 9589824 ~ 9590081 (-)
AMCG00014297 NA other downstream 16806 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 732641 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 744042 7402152 ~ 7411890 (-)
AMCG00014271 NA other downstream 768948 7378088 ~ 7386984 (-)
AMCG00014241 NA other downstream 2047574 6059489 ~ 6108358 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 224695 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 1146649 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 1842544 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 1899507 10058097 ~ 10061230 (-)
G69537 NA other upstream 2638126 10796716 ~ 10798147 (-)

Expression


Co-expression Network