AMCG00014301 (rp2,LOC107753404,LOC107711097,LOC107685300)


Basic Information

Item Value
gene id AMCG00014301
gene name rp2,LOC107753404,LOC107711097,LOC107685300
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8189023 ~ 8197625 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014301
gagagagtatctGAGCATAGGTAGACCGCAGCTGGGCATTATTGTACCCGTGACGAGGCACGACAGGCGGTGAAAATGGGATGCTTCTTTTCGAAGAAATCGAGAAGAAAACCGGAGAAGGAGGAGACCCCCGGGGGACAGACCGACGCCGAGGAGGCCCCCAAGCAGTACAGCTGGGACACCCGGGAGAAGGTTGATCCCAAGGACTATATGCTGACTGGTATTAAGGATGAAACGGTAGGCCGTTTACCTGGCAAACTGAACGGCCAACAGTTTGTCATTCAAGACTGTGAGAACTGCAACATCTACATCCTGGACCACTCGGCCACCATCACCATCGATGACTGCACGAACTGCAGGATAGTGCTGGGGCCCGTCAAGGGCAGCGTGTTCTTCCGGGACTGCAAGGACTGCAAGTGCGTGGTGGCGTGCCAGCAGTTCCGCACCCGGGACTGCAAGAAGATGGAGGTGTTCTTGTGCTGCGCCACCCAGCCCATCATCGAGTCCTCCACCGGCATGAAGTTCGGCTGCTTCCAGTACTACTACCCTGACCTTGCCTTCCATTTCAAGGATGCCGGCTTGAGCATCTTCAACAACAACTGGAGCAACGTTCATGACTTTACCCCTGTGTCGGGGGAGACCAACTGGAGCCTGCTGCCCGAGGACGCCGCGGTGCTGGACTACGTGCCACTGCCCGACTCGGACGAGTTCAAGTCGGTCAGGGTCTCCACAGACTCTGGCAGGAGCATCATCCCCGTCACCTGGGGCCAGCGGCGCAAGGAGAGCGACGAGTCCTGCCTGTTCGTGTTTTTCGCCGGGGATTACACGACTGCCAATGCCAGGAAGCTCATCGATGAGGTGGTGGGAAAGGGCTTTGTGCTGGTCCAAACAAAGGAGGTGTCCATGCGCCCAGAAGATGCCAGTAGAGTATTTCAGCAGAATGTGGAAGATTTCACCGATTTGATCACAAAAGGTCCAGTTGTGGCTTTGGAGCTGAATGGAGACGGGGTTGTAGAGACCTGCCGTAACATTGCAAATGAAGTGTTTAGCAGCTCCAAGGTGtttgtttcagaaaacaaaactacgTCTTCAAGAGATGTGGACAATTTCTTCAACTTTGCAGATATGCAAATGGGAATATGAAGTCCTTTAAGACTGAAGAAAGtcactagtttttttttctttagcgTGTATGACCTTTTCTAAAACTGTCAgtattgtgatttttaacactttaaagaTATAACACTTTCTATCTTGCTAACCGaacatgattgttttttaaaagggaaTAAACAaagtttcacaaaatgtaattttttttatttttttttttatatatatatatatattggctgTATATATTAGCCATGCAACCAGAAAATCTATCCTCTTATGAATGTATATTATAGacattgtttttggttgttttgcatCCACTTTTATTTCCGTTTTGATTCCCATACTGCTTTACTATAGTTGGGCCAAATTAGGACATTCCTCTCTATGGGGAACAAATTTAGTTTAACACTCCTGTAcaataagaataacaaaaatggTAATGCATAACTTATTGTACGTAATTTACTTAGTTGACAATcgtgaaatgttttttttcctgtgtcagCCTAATTGGTTTCTGCAGCTATTTATTGTTGTCAAATAcgtgtcattgtttttgttattttggtgGTTAGGAATGAAGACAAATGGAACCCTtaagtttttatgtattttatgtctcCCCTCCATATGTTGATTTCATTACTTAATACAGCAATGcttgtataattatattaatgtatatttgtgtaaaaCTTCGAAATCTTTTAGAAAAACTGTTACATTGGACAACTGCAGGCTGTTTAGGGCTTTGTTTTATGTTCACcttccaagttttttttttttttaaccacgcTCTTCGGTAGGCATcgctctactgggtggagcgGAGGAGGAGTGCGGATCAAATCCCAAGCATGGGCTAAGTTTGCTTTCCATTATCTTCCTTCCCAGTCTGTAAATTCTGACCTTCAATTCTCCAGTGACAGTTATTTGTGCCCTGTGTTAAACGAGGGACACACAATGTTACactaatatgtaaaatatttaatgtatgtctatttgaaattaatgtctTGTATCCACCTCAAAAAAGCCTAATTTTGTTCCCCCATCAGTTTTATTATCTAGTGAAGTGCTTTTGAATTAAAGAAAGTGTGAAGcgttttaattttacatttttatggcAGATCAAAGAAAATGCTTTCAGCTCCCATTGTGACCAAGTACAGAAGTATGTATTTGTaagcttgtttaaaaaaatatgggtttttgtaaagtaaaatgttgcatattttattttgtagtactGAATGTATGCGATTAACAATAAAACTTTATGAATTGGTACTTTGCTTAATCTTTgttagtaaattaataaaaaaaaaatctgtcgaATTT

Function

symbol description
rp2 Predicted to enable GTPase activator activity. Acts upstream of or within animal organ development; photoreceptor cell maintenance; and photoreceptor cell outer segment organization. Predicted to be located in cell projection and plasma membrane. Predicted to be active in cilium and periciliary membrane compartment. Is expressed in several structures, including fertilized egg; liver and biliary system; pleuroperitoneal region; sensory system; and trunk. Used to study retinitis pigmentosa 2. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 2. Orthologous to human RP2 (RP2 activator of ARL3 GTPase).

NR:

description
protein XRP2 isoform X1

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0010842 retina layer formation biological_process
GO:0001947 heart looping biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K18272 RP2; protein XRP2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014301 True 2463 mRNA 0.42 5 8189023 8197625

Neighbor

gene id symbol gene type direction distance location
AMCG00014300 LOC107585190 coding downstream 2783 8166242 ~ 8186240 (-)
AMCG00014295 NA coding downstream 33620 8148387 ~ 8155403 (-)
AMCG00014296 NA coding downstream 42015 8142189 ~ 8147008 (-)
AMCG00014291 LOC107586940 coding downstream 129005 8020985 ~ 8060018 (-)
AMCG00014286 NA coding downstream 406021 7752906 ~ 7783002 (-)
AMCG00014302 LOC107582727 coding upstream 62102 8259727 ~ 8260980 (-)
AMCG00014303 NA coding upstream 106906 8304531 ~ 8305181 (-)
AMCG00014305 nipa2 coding upstream 124809 8322434 ~ 8326420 (-)
AMCG00014304 NA coding upstream 132431 8330056 ~ 8334452 (-)
AMCG00014312 NA coding upstream 339312 8536937 ~ 8539049 (-)
G68981 NA non-coding downstream 314665 7874153 ~ 7874358 (-)
G68905 NA non-coding downstream 562648 7625985 ~ 7626375 (-)
G68875 NA non-coding downstream 723361 7465409 ~ 7465662 (-)
G68874 NA non-coding downstream 729134 7455978 ~ 7459889 (-)
G68867 NA non-coding downstream 747851 7440500 ~ 7441172 (-)
G69086 NA non-coding upstream 28869 8226494 ~ 8250561 (-)
G69233 NA non-coding upstream 692931 8890556 ~ 8890839 (-)
G69250 NA non-coding upstream 800801 8998426 ~ 8998626 (-)
G69352 dcaf6 non-coding upstream 1152163 9349788 ~ 9355238 (-)
G69372 NA non-coding upstream 1392199 9589824 ~ 9590081 (-)
AMCG00014298 NA other downstream 30433 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 49897 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 765732 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 777133 7402152 ~ 7411890 (-)
AMCG00014271 NA other downstream 802039 7378088 ~ 7386984 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 185660 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 1107614 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 1803509 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 1860472 10058097 ~ 10061230 (-)
G69537 NA other upstream 2599091 10796716 ~ 10798147 (-)

Expression


Co-expression Network