AMCG00014305 (nipa2)


Basic Information

Item Value
gene id AMCG00014305
gene name nipa2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8322434 ~ 8326420 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014305
ATGTTCCTTCacagtattcatattaataatgttatgtTTTCCCTCACAGGATCTGTTGTTTGTCTGCCCTGTCCTTCAGATCAGCAACTCAACTGTCCGGTGATCAATGTAACAGATTCGAACTCCACCTCAACAATCACGATGGGCCAGGACAGGGGGAAATATGACTTCTACATTGGGCTAGTCTTAGCCATTAGCTCCAGCATTTTCATCGGAGGCAGCTTCATCCTGAAGAAAAAAGGCCTTCTGCGCTTGGCCAAAAAGGGTTCAATGAGAGCAGGCCAAGGTGGTCATGCATACCTTAAAGAGTGGCTCTGGTGGGCCGGTTTGCTATCCATGGGTGTCGGTGAAGCAGCCAATTTTGCTGCCTATGCGTTTGCTCCAGCCACACTAGTCACCCCTCTGGGAGCCTTAAGTGTTCTTGTAAGTGCCGTTCTGTCCTCGTACTTCCTGAATGAGAGGTTGAACCTGCATGGGAAGATCGGCTGTTTGCTCAGTATCCTGGGGTCCACGGTGATGGTGATTCACGCACCACAAGAGGAAGAGATTGACAGCCTGAATGAAATGGCCAAGAAACTGGTAGATCCAggTTTTGTGGTGTTCGCTACCTTTGTTGTGATAGTTGCACTGATATTCATCTTTATAGTGGGACCTCGTCATGGACAAACCAACATCCTGGTCTACATCACAATCTGCTCTGTGATCGGAGCTCTGTCTGTCTCGTGTGTAAAGGGCTTGGGCATCATCATAAAGGAACTGTTCGCAGGGAAGCCCGTCCTTAGGAACCCCTTGTCTTGGATTTTATTGCTGAGCCTCATAACTTGCGTGAGCACACAGATCAACTACCTGAACAAGGCTCTGGATATCTTCAACACCTCCCTGGTGACGCCGATCTATTACGTGTTCTTCACCACCTCGGTGCTGTCCTGCTCGGCCATCCTCTTCAAGGAGTGGCAGCACATGGGCTCGGACGACATCATCGGCACGCTCAGCGGCTTCATCACCATCATCGTGGGCATCTTCCTGCTCCACGCCTTCAAGGACGTCAACATCAGCCTGGCCAACCTGCCCGTGACGGTGAGGAAGGACGAGCGCGGCGCCCCCTCGACCAACGGGATGGCGTCCCACAGCGCGTATGAACTGTTTGAGAATGAGCAGACGCAAGAAGGCACTCTGGACTCGCCCTTTGACAGTGTGTCTCGGAGAAACGGCACTGTGGCGACCTTGTGAATCCATAGGAAAAGTAAACGGCTATTAAATGCTGTACACTGTGTCCAGGTTTGTAGCCCGCAATGGCACGAACCTTTCATTTTCACAGGTGGAAGCTTTGCATTTGgttgaaaacaaaagacaatctGTTCTTTTAAACAAAGTGTGACTTGGATGGACCAATGAATTGTATTGAAGTTTTTATTTGCCTTACCCGTCACAAAGCTTGTCTTTTGTAATTGAGTATGACTACATGGCTCCGTTTCATCACATTGCCATGTAACCTTGTAAATAGGACttcaagatgtttttaaattgccTCGTTATACTTTCTGTATAGAGATATAAACATGCACTGAGTTTATTTCTACAACTGAATCGAGGGTCGTTTCCTCATGGGTGTCCTCACACTTCACATCAAACCCAGCCGTCGTGGGAACATGTGAAATGTCCAAGAGCCACTGTAGTAGCTTTCATATTAAAGACGTTCATTACCTTTTCTCACTTTCTCGGATTTAGCACAATGTTGGATATTTACcctaatgtttaatttgaaatattggTTCACAAAATTAGTATTAAGCCTGTGCCAAAATCCAAACCTCAGTTAGCTGTGGCGTCTGGCTAAGCACTGGTTATAAGGTTATTCTTAATAagtatatatatgattttaataCCTCCagacagtttaattttaaagacGGGAATTATTTTGAAGGATAATTAAATATACTGGTTAAAAGCTTGGCAAGAATGTTAGGATGCATCTTGTACTATAGTATTGCACAATTATACCATCAATATTCAAAAACTTAGCTTTTGTTGTGGTTCCGTTTATTACCTAGCAATACTATAGTACAATATGGCACTCTTCACCGTTTAAAGAGTTTGAAGTCTGAAGGATTCGGTTTTTCCTCAGGGCATTGTAAATAATTGTTACAAGAGTTCTtcagaataaagaaaatgttcGTAAATGGTAGCGGT

Function

symbol description
nipa2 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism. Orthologous to human NIPA2 (NIPA magnesium transporter 2).

NR:

description
PREDICTED: magnesium transporter NIPA2 isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015693 magnesium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG:

id description
K22733 NIPA, SLC57A2S; magnesium transporter

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014305 True 2193 mRNA 0.45 5 8322434 8326420

Neighbor

gene id symbol gene type direction distance location
AMCG00014303 NA coding downstream 17253 8304531 ~ 8305181 (-)
AMCG00014302 LOC107582727 coding downstream 61454 8259727 ~ 8260980 (-)
AMCG00014301 rp2,LOC107753404,LOC107711097,LOC107685300 coding downstream 124809 8189023 ~ 8197625 (-)
AMCG00014300 LOC107585190 coding downstream 136194 8166242 ~ 8186240 (-)
AMCG00014295 NA coding downstream 167031 8148387 ~ 8155403 (-)
AMCG00014304 NA coding upstream 3636 8330056 ~ 8334452 (-)
AMCG00014312 NA coding upstream 210517 8536937 ~ 8539049 (-)
AMCG00014310 gabrg3,LOC107711006 coding upstream 274742 8601162 ~ 8615001 (-)
AMCG00014311 NA coding upstream 405158 8731578 ~ 8758181 (-)
AMCG00014317 cnga3a,LOC108441138 coding upstream 703685 9030105 ~ 9040045 (-)
G69086 NA non-coding downstream 71873 8226494 ~ 8250561 (-)
G68981 NA non-coding downstream 448076 7874153 ~ 7874358 (-)
G68905 NA non-coding downstream 696059 7625985 ~ 7626375 (-)
G68875 NA non-coding downstream 856772 7465409 ~ 7465662 (-)
G68874 NA non-coding downstream 862545 7455978 ~ 7459889 (-)
G69233 NA non-coding upstream 564136 8890556 ~ 8890839 (-)
G69250 NA non-coding upstream 672006 8998426 ~ 8998626 (-)
G69352 dcaf6 non-coding upstream 1023368 9349788 ~ 9355238 (-)
G69372 NA non-coding upstream 1263404 9589824 ~ 9590081 (-)
G69373 NA non-coding upstream 1264756 9591176 ~ 9591381 (-)
AMCG00014298 NA other downstream 163844 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 183308 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 899143 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 910544 7402152 ~ 7411890 (-)
AMCG00014271 NA other downstream 935450 7378088 ~ 7386984 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 56865 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 978819 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 1674714 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 1731677 10058097 ~ 10061230 (-)
G69537 NA other upstream 2470296 10796716 ~ 10798147 (-)

Expression


Co-expression Network