AMCG00014309 (oca2,LOC107716962)


Basic Information

Item Value
gene id AMCG00014309
gene name oca2,LOC107716962
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8478982 ~ 8507687 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014309
ATGTTCCTCGGAATATGCCTTGTTCTGCTGACATCGTTCCCTTTTCTACGACTCCTGTACTGGAACACCAAGCTGTACAATAAAGAGCCTAGTGAGATTGTCGAGTTAAAGCATGAAATTCTCGTCTGGAGACTGACAGCACAGCGCATTAACCCTGCCAGCCGAGAGGAGACCGCTGTAAAATGTCTCCTAATGCAAAAAGTGCTTACTTTGGAGAGCCTTTTGCGGAAGAAACTTAAAACCTTTCAAAGGCAAATTTCTCAAGAAGACAAAAACTGGGAGACCAATATCCAGGAACTGCAGAAAAAGCACAGGATATCTGACAAAATCCTTTTGGTCAAATGCATTTCTGTGCTGGGAgttgtcattttcatgttcTTTGTCAACTCCTTTGTCCCCAGTATACATCTTGATCTcgGATGGATAGCGATGCTGGGAGCCCTGTGGCTGCTGGTTCTAGCGGATATCCAGGATTTTGAGATGATCCTGCACCGAGTGGAATGGGCCACCCTCCTGTTCTTTGCCTCTCTATTTGTTCTGATGGAGGCTTTGGCCCAACTCCAGCTGATCGACTATATTGGGGAGCAGACGGCTGTATTGATAAAGGCTGTGCCGGAAGACCAGCGCCTGGCCATCGCGATCATTTTGGTGATCTGGGTTTCTGCTTTGGCATCATCCCTCATTGACAATATCCCCTTCACTGCCACCATGATTCCAGTCCTCATTAATCTAAGTCAAGATGTTGATGTGAACCTGCCGGTTAAACCTCTGATTTTTGCACTGGCGATGGGGGCTTGTCTCGGAGGAAATGGGACCCTGATCGGGGCCTCTGCCAACGTGGTGTGTGCTGGGATTGCGGAGCAGCATGGCTACGGCTTCTCCTTCATGGAGTTCTTTAGTCTGGAGAATGAGGTGGCAGGCTCCGGCAATTTGTCCCACCTGTTCCCAGGAGCACGGATAACATTTTGA

Function

symbol description
oca2 Acts upstream of or within iridophore differentiation; melanin biosynthetic process; and melanocyte differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in actinic keratosis; oculocutaneous albinism type II; pigmentation disease; skin cancer (multiple); and squamous cell carcinoma. Orthologous to human OCA2 (OCA2 melanosomal transmembrane protein).

NR:

description
PREDICTED: P protein

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24200 OCA2; P protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014309 True 969 mRNA 0.49 10 8478982 8507687

Neighbor

gene id symbol gene type direction distance location
AMCG00014308 herc2,LOC102311645,LOC101466252,LOC102196790 coding upstream 77623 8386165 ~ 8401359 (+)
AMCG00014307 LOC103356925 coding upstream 96698 8343001 ~ 8382284 (+)
AMCG00014306 cyfip1 coding upstream 157243 8263436 ~ 8321739 (+)
AMCG00014299 slc9a7,LOC107673530 coding upstream 228047 8204822 ~ 8250935 (+)
AMCG00014293 NA coding upstream 317702 8160408 ~ 8161280 (+)
AMCG00014314 gabrb3,LOC107673538 coding downstream 287541 8795228 ~ 8824532 (+)
AMCG00014315 NA coding downstream 367480 8875167 ~ 8875832 (+)
AMCG00014313 atp10a coding downstream 436308 8943995 ~ 8972432 (+)
AMCG00014316 ube3a,LOC101472780 coding downstream 496813 9004500 ~ 9020633 (+)
AMCG00014321 NA coding downstream 582187 9089874 ~ 9130531 (+)
G69023 NA non-coding upstream 342772 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 463979 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 604240 7874527 ~ 7874742 (+)
G68904 NA non-coding upstream 852578 7625988 ~ 7626404 (+)
G68771 NA non-coding upstream 1420663 7056707 ~ 7058319 (+)
G69206 NA non-coding downstream 226636 8734323 ~ 8735939 (+)
G69232 NA non-coding downstream 382899 8890586 ~ 8890834 (+)
G69326 NA non-coding downstream 858850 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 1393763 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 1466737 9974424 ~ 10028351 (+)
AMCG00014272 tbc1d23 other upstream 996422 7464503 ~ 7482560 (+)
G68848 NA other upstream 1062388 7413640 ~ 7416594 (+)
G68830 NA other upstream 1129515 7346195 ~ 7349467 (+)
G68475 NA other upstream 3827018 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 4347264 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 1495371 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 1640292 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 4738622 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 5147551 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 5681877 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032183 oca2 coding NC_007117.7 CM002890.2 37894220 ~ 38054851 (+)
grasscarp (Ctenopharyngodon idella) CI01000340_08259928_08321896 OCA2 coding CI01000340 null 8259928 ~ 8321896 (+)