AMCG00014310 (gabrg3,LOC107711006)


Basic Information

Item Value
gene id AMCG00014310
gene name gabrg3,LOC107711006
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8601162 ~ 8615001 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014310
ATGCTCTTTGTAATTACAGATGGATACCCTAGAGATGAAATGGTTTACAAGTGGAGGAAAAATTCAGTGGAAGCAGCAGACCAGAAATCCTGGCGACTTTACCAGTTTGATTTTATGGGTTTACGAAACACCACAgatgtaataaaaacatcttcagGTGATTACGTGGTAATGACAGTGTACTTTGATTTAAGTAGAAGAATGGGGTATTTTACCATCCAGACGTACATTCCTTGCATACTCACAGTTGTTTTATCGTGGGTCTCGTTCTGGATTAAGAAGGACGCCACCCCCGCCAGGACCGCACTTGGCATAACCACGGTATTGACCATGACAACGCTGAGTACAATCGCAAGAAATTCCTTACCAAGAGTCTCCTACGTCACAGCAATGGACCTCTTTGTGACCGTGTGCTTCTTGTTTGTCTTTGCGGCTTTGATGGAGTATGCAACGCTCAATTACTATTCCAGTGTAAGAAAGCCAAGCTGcacgaagaagaaaaaatcgAACTACTCGGTGCTCGATGTGGGACCACCTCCGACAGTCATCACATTAAACAATTCAATGTACTGGCAGGAGTTTGAGGAGGCCTGTGTGTACGAGTGCTTGGATGGCAAAGACTGTCAGAGTTTTTTCTGCTGCTATGAAGAATGTAAAGGCGGCGCGTGGCGGAAAGGACGGGTCCACATAGACATCTTAGAGCTAGACGCCTATTCTCGTGTCTTCTTTCCTACATCGTTTCTATTGTTCAACCTCGTCTACTGGGTTGGCTACCTCTACCTATAA

Function

symbol description
gabrg3 Is expressed in brain.

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit gamma-3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014310 True 786 mRNA 0.45 4 8601162 8615001

Neighbor

gene id symbol gene type direction distance location
AMCG00014312 NA coding downstream 62113 8536937 ~ 8539049 (-)
AMCG00014304 NA coding downstream 266710 8330056 ~ 8334452 (-)
AMCG00014305 nipa2 coding downstream 274742 8322434 ~ 8326420 (-)
AMCG00014303 NA coding downstream 295981 8304531 ~ 8305181 (-)
AMCG00014302 LOC107582727 coding downstream 340182 8259727 ~ 8260980 (-)
AMCG00014311 NA coding upstream 116577 8731578 ~ 8758181 (-)
AMCG00014317 cnga3a,LOC108441138 coding upstream 415104 9030105 ~ 9040045 (-)
AMCG00014319 NA coding upstream 432303 9047304 ~ 9050642 (-)
AMCG00014320 NA coding upstream 446032 9061033 ~ 9085213 (-)
AMCG00014318 NA coding upstream 516414 9131415 ~ 9135387 (-)
G69086 NA non-coding downstream 350601 8226494 ~ 8250561 (-)
G68981 NA non-coding downstream 726804 7874153 ~ 7874358 (-)
G68905 NA non-coding downstream 974787 7625985 ~ 7626375 (-)
G68875 NA non-coding downstream 1135500 7465409 ~ 7465662 (-)
G68874 NA non-coding downstream 1141273 7455978 ~ 7459889 (-)
G69233 NA non-coding upstream 275555 8890556 ~ 8890839 (-)
G69250 NA non-coding upstream 383425 8998426 ~ 8998626 (-)
G69352 dcaf6 non-coding upstream 734787 9349788 ~ 9355238 (-)
G69372 NA non-coding upstream 974823 9589824 ~ 9590081 (-)
G69373 NA non-coding upstream 976175 9591176 ~ 9591381 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 216938 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 442572 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 462036 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 1177871 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 1189272 7402152 ~ 7411890 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 690238 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 1386133 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 1443096 10058097 ~ 10061230 (-)
G69537 NA other upstream 2181715 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 2510028 11125029 ~ 11137086 (-)

Expression


Co-expression Network